RetrogeneDB ID:
retro_ecab_182
Organism:
Horse ( Equus_caballus )
Location:
1:111301057-111301926 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
65.76 %
Coverage:
99.31 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_182
AGACAAAGGAATATGTTCCAACTAAGGGAAAAAGATAAAACCTCTGAAAAGTAGCTAAAT
GAAACAGAGATAAACAATCTACCTGATAAAAAGTACAAACCCGTAGTCATAAGGATGCCC
ACTGATCTTCGGAGAAGAATGGATGAACACAGTGAGAACTTTAAAAAAGAACTAGAAAAT
ATAAAAAAGAATCAATCAGAACTAGAGAATACAATAATGGAAACAAAAAATTCACTAGAG
GGAATCAATAGCAGAGTAGATGATACAGAAGAACACATCAGCGAGCTGGATGAAAGACTA
GAGGAAATCACTCAGGCAGAAGAGAAAATAGAATGATCAAGATTGAGGACAGTCTCAGGG
ACTTCTGGGACAACATCAAGTGTACTAACATTCAGAGTATATGGGTCCCAGAAGGAGAAG
AGAGAGACAAAGAGACAGAGAATCTATTCAAAGAATTATTTGCTGAAAACTTTCCTAATT
TAAGGAAAGAAACAAACACCCAGGTACAGGAAGCACAGAGAGCATCACACAAGATGAATC
CAAAGAGGCTCACACCAAGACACATAATTAAAATGTCAAGAGTTAAAGAGAGAATCCTAG
AAGCTGCAAGAGAAAGGCAACAAGTTGCATACAAAGGAAACCCCATAAGGCTATCAGTGA
ACTTCTCAGCAGAAACCTTACAGGTTAGAAGGGAGTGGCACAATATATTTAAAGTGCTGA
AAGTAAAAAACCTACAGCCAAGAATACTCTACCCTGCAAAGTTATCATTCAGAATGGAAA
GAAAGATAAAGAGTTTTCTAGACAAGCAAAATCTAAAGGACTTTATCCTCAATAAACCAG
CTTTACAAGAAATGCTAAAGGGACTTATT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RQRSTFQVKEQDKTPEKELNETEISNLPDKVFKQKV-KLLTDLGRRMDEHSENFNKELENIKK-QSEMKNTIMEMKNSLEGLNSRVDDTEERISKLDERL
RQR..FQ..E.DKT.EK.LNETEI.NLPDK..K..V....TDL.RRMDEHSENF.KELENIKK.QSE..NTIME.KNSLEG.NSRVDDTEE.IS.LDERL
Retrocopy
RQRNMFQLREKDKTSEK*LNETEINNLPDKKYKPVVIRMPTDLRRRMDEHSENFKKELENIKKNQSELENTIMETKNSLEGINSRVDDTEEHISELDERL


Parental protein
EEVTQAEQIKE-KMKKTDSLRDLWDNIKCTKIRITGVPEEEGDKGAEIYLIK--IAENFPKLQKEADFQVQEAQNAPNRINPKRHTPRHIINKISNPGRN
EE.TQAE...E...K..DSLRD.WDNIKCT.I....V............L.K...AENFP.L.KE...QVQEAQ.A....NPKR.TPRHII.......R.
Retrocopy
EEITQAEEKIE/MIKIEDSLRDFWDNIKCTNIQSIWVXXXXXXXXXXXXLFKELFAENFPNLRKETNTQVQEAQRASHKMNPKRLTPRHIIKM----SRV


Parental protein
KERILKAARERQQVTYKGNSIRLSADLSAETLQARRKWHSIFKVLNRKK-PPRILYLARSSFIMEGEIKCFPDKQKLKEFITKKPALQEMLKGLI
KERIL.AARERQQV.YKGN.IRLS...SAETLQ.RR.WH.IFKVL..K...PRILY.A..SF.ME..IK.F.DKQ.LK.FI..KPALQEMLKGLI
Retrocopy
KERILEAARERQQVAYKGNPIRLSVNFSAETLQVRREWHNIFKVLKVKNLQPRILYPAKLSFRMERKIKSFLDKQNLKDFILNKPALQEMLKGLI


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide