RetrogeneDB ID:
retro_ecab_183
Organism:
Horse ( Equus_caballus )
Location:
1:112266184-112266676 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
52.38 %
Coverage:
85.94 %
Frameshifts:
3
Stop codons:
3


Parental gene:
Parental gene symbol:
RPL9
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L9 [Source:HGNC Symbol;Acc:10369]

Genomic region (view in browser)





>retro_ecab_183
ACCATTCTCAACAACCACACAGTTGACATCTCACAAAGAATCAACATAACTCTGAAAAAA
CACCCAGATTTAACGAAGGACCCCAGAGCAATCCTGCAGAGAAACTTCAATCACATCATT
GTGAAACTCAGCTTCATTGACCAGAAAAACAAGCTACTCTAGGCTGACAAATGGTAGGGA
AAAACAAAGAAATTAGCTACTGTTTGCACTATCTATTGTGATGTACAGAAAGGGATCAAG
AGTTTTCCTGGGGCCTCCATTACAGGGTGAGTTCTGCCCCCCTCACTTTCCCAACAAGGT
TATTATTCAGGAGAGTACATGTTTCACTGACATCCGCAGTTTCTTGGGTGAAAATATATC
TGCAGAGTTTGAATGAGGTCGGGTGTTGCTTGCTTAATATTTCAAGCCCAGAAAAATGAG
TTAATTTCTGAAAGAAATGACATTGAGCTTATACCAAATTCAGTGGCATTGATTCATGAA
ACCATGAAAGTG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
TILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWWGNRKELATVRTICSHVQNMIKGV-TLGFRYKMRSVYA-HFP
TIL.N.TVDI.....ITLK......K.PR..L.R.FNHI.V.LS....K.K.L..DKW.G..K.LATV.TI...VQ..IK.....G..Y...S....HFP
Retrocopy
TILNNHTVDISQRINITLKKHPDLTKDPRAILQRNFNHIIVKLSFIDQKNKLL*ADKW*GKTKKLATVCTIYCDVQKGIKSF/SWGLHYRVSSAPL/HFP


Parental protein
INVVIQENGSLVEIRNFLGE-KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTV
..V.IQE......IR.FLGE.KYI.RV.MR.GVAC...QAQK.ELI.E.NDIEL..NS.ALI.....V
Retrocopy
NKVIIQESTCFTDIRSFLGE/KYICRV*MRSGVACLIFQAQKNELISERNDIELIPNSVALIHETMKV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide