RetrogeneDB ID:
retro_ecab_186
Organism:
Horse ( Equus_caballus )
Location:
1:127830816-127831277 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
71.52 %
Coverage:
98.12 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
RPS16
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S16 [Source:HGNC Symbol;Acc:10396]

Genomic region (view in browser)





>retro_ecab_186
CCACACAGTAAGGAGCTCTTGTCTACGCCAGCATCCGTGCTGTCCAAGGGCCCTCTGCAG
TCCATGCATGTCTTTGAACAGAAGACGGCCACAGCCCTAGTGCATTGCAAACAGGGCAAC
GGCCTCATCAAGGTGAATGGGTGGCCCCTGGAGATGATGGAGCTACGCACCCTGCAGTAC
AAGCTCCTGGAACCTGTTCTGGGCAAGGAGTGATTTAGCAGTGTGGACATCGTAGTCCGT
GTGAAAGATGTTTGTCACATGGCCCAGATTTATGCAATCCTCCAGTCCATCTCCAGAGCC
CTAGTCCCCGTTACCAGAAATACGTGGATGAGGCTTCCAAGAAGGACATCAAAGACATCC
TCATCCAGTATGATCCGGCCCTGTTGGTAGCTGATCCCCGTAACTGCGAATGCAAAGAGT
TTACAGGTCCTGGTGCCAGTGCCCACTATCAGAAAGCCTAC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.15
SRP021940_embryo 0.19
SRP021940_placental_villous 0.4
SRP021940_synovial_membrane 0.26
SRP021940_testis 0.3

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
PRGEEQSSTPPAMPSKGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSI
P...E..STP....SKGPLQS..VF...KTATA..HCK.GNGLIKVNG.PLEM.E.RTLQYKLLEPVL..GKE.F..VDI.VRVK...H.AQIYAI.QSI
Retrocopy
PHSKELLSTPASVLSKGPLQSMHVF-EQKTATALVHCKQGNGLIKVNGWPLEMMELRTLQYKLLEPVL--GKE*FSSVDIVVRVKDVCHMAQIYAILQSI


Parental protein
SKALVAY-YQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSY
S.ALV...YQKYVDEASKK.IKDILIQYD..LLVADPR.CE.K.F.GPGA.A.YQK.Y
Retrocopy
SRALVPV/YQKYVDEASKKDIKDILIQYDPALLVADPRNCECKEFTGPGASAHYQKAY


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide