RetrogeneDB ID:
retro_ecab_187
Organism:
Horse ( Equus_caballus )
Location:
1:128380515-128380773 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
82.76 %
Coverage:
83.65 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
INIP
Parental gene aliases:
No gene alias available
Parental gene description:
INTS3 and NABP interacting protein [Source:HGNC Symbol;Acc:24994]

Genomic region (view in browser)





>retro_ecab_187
ATGGCAGCAAACCCTTCAGGACAAGGCTTTCAAAACAAAAACAGAGTTGCAATCTTGGCA
GAACTGGACAAAGAGAAAGGAAAATTACTAAAGCAGAAGCAATCTTCAACAAATCATCCT
GGAGCTAGCATTATGCTCTGGAGACCCTCACTTAATAAGGACTTCCAGGATCATGCTGAG
CAGCAGACTGCAGCCCAACACAAGGTAGCTTCGCAGCATGCAAATGCACATTCATCTGGA
TACTTCACAATTCAAGAC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.1
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAANSSGQGFQNKNRVAILAELDKEKRKLLMQNQSSTNHPGASIALSRPSLNKDFRDHAEQQHIAAQQKAALQHAHAHSSGYFITQD
MAAN.SGQGFQNKNRVAILAELDKEK.KLL.Q.QSSTNHPGASI.L.RPSLNKDF.DHAEQQ..AAQ.K.A.QHA.AHSSGYF..QD
Retrocopy
MAANPSGQGFQNKNRVAILAELDKEKGKLLKQKQSSTNHPGASIMLWRPSLNKDFQDHAEQQ-TAAQHKVASQHANAHSSGYFTIQD


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide