RetrogeneDB ID:
retro_ecab_188
Organism:
Horse ( Equus_caballus )
Location:
1:131472998-131473485 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
64.5 %
Coverage:
60.44 %
Frameshifts:
4
Stop codons:
5


Parental gene:
Parental gene symbol:
DUSP5
Parental gene aliases:
No gene alias available
Parental gene description:
dual specificity phosphatase 5 [Source:HGNC Symbol;Acc:3071]

Genomic region (view in browser)





>retro_ecab_188
CTTGCAGCTCAGCGGCCCCCGGGTCTGCCTCCGTCAGGCAGGATCTGAGCCTTTTGCTCG
GAGTAACCCTAGTGCTGAGCAGATGTACAACCCATTTCACAGAAGATTGAAACCTAGGGA
GCCCTCTGCCACCGGTGTGGGAAACCAGTTCTCACCATCACGGACAGGCCGGCTCCAGTC
AGGGCGGCCCAGTCGCAATCCTTCCTTTCCTCCACCTTGGAAGTGCCTCTCAGGCATGCA
AGTGCGACTTCCTCGCCATTCTGCACATCACGGCCCTGCTGAATGTCTCGTGGCACACCC
CTGAGGCCTGCACGACCCACCTACACTGCAAATGGATCCCGTGGAAGACAGCCAGCCACT
GACATTAGCTCCCAGGTTCAAGAAGCAATAGACTTCGCTGACTGTCAGGGAAAAGGGAGG
CAAGGTCCTGGTCCACTGTGAGGCTGGGATCTCCCTTTTGCCCACCATCTTCATGGCTTA
CCTCATG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LPARRPAVYFLKGGYETFYSEYPECCVDVKPISQEKIETERALISQCGKPVLNISYRPV-YDQGGPVEILPFLYLGSAYHASECEFLANLHITALLNVSR
L.A.RP......G....F.SE.P.C..DV.PISQ.KIET..AL...CGKPVL.I..RP....QGGPV.ILPFL.LGSA..A..C.FLA.LHITALLNVS.
Retrocopy
LAAQRPPGLPPSGRI*AFCSE*P*C*ADVQPISQ-KIET*GALCHRCGKPVLTITDRPA/SSQGGPVAILPFLHLGSASQACKCDFLAILHITALLNVSW


Parental protein
RASEACTTRLHYKWI-PVEDSH-TADISSHFQEAIDFIDCVREKG-GKVLVHCEAGISRSPTICMAYLM
...EACTT.LH.KWI.PVEDS....DISS..QEAIDF.DC...KG.GKVLVHCEAGIS..PTI.MAYLM
Retrocopy
HTPEACTTHLHCKWI/PVEDSQ/ATDISSQVQEAIDFADC-QGKG\GKVLVHCEAGISLLPTIFMAYLM


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide