RetrogeneDB ID:
retro_ecab_189
Organism:
Horse ( Equus_caballus )
Location:
1:133130324-133130706 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
76.34 %
Coverage:
100.0 %
Frameshifts:
2
Stop codons:
2


Parental gene:
Parental gene symbol:
COX5B
Parental gene aliases:
No gene alias available
Parental gene description:
cytochrome c oxidase subunit Vb [Source:HGNC Symbol;Acc:2269]

Genomic region (view in browser)





>retro_ecab_189
ATGGCTTCAAGGTTACTTCGCGGAGCTGGAGTGCTGGCCGTGTAGGCCCTGAGGGCCCGT
GGTGCCCATGGAGTTGCCGTGGTGTGCTCTATGGCGTCTGGAGGTGGTGTTCCTATGACG
AGCAGGTGACTGGGCTGGAGAGGGAGGTCCTAGGAGCTGTATGGAAGGGACTGGACCTAC
ACAATATGCTAGCCCCAAAGACAGCTTCAGGCACCAAGGAAGACCCTAATTTAGTCCCCT
CCATCACCAACAAGCCGATAGTGGGCTGCACCTGTGAAGAGGACAACAGTGCTCTCATCT
GGTTCTGGCTGCACAAAGGCGAGACCCAGCAGTGCTCCAACTGTTGAACCCATTACAAGC
TGTGCCTCCTCAGTTGGCCCAT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.05
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MASRLLRGAGALSAQALRARGPRGVAAVRSMASGGGVPT-DDEQATGLEREVLMAARKGLDPYNILAPKAASGTKEDPNLVPSITNKRIVGCICEEDNSA
MASRLLRGAG.L...ALRARG..GVA.V.SMASGGGVP..D....TGLEREVL.A..KGLD..N.LAPK.ASGTKEDPNLVPSITNK.IVGC.CEEDNSA
Retrocopy
MASRLLRGAGVLAV*ALRARGAHGVAVVCSMASGGGVPM/DEQ-VTGLEREVLGAVWKGLDLHNMLAPKTASGTKEDPNLVPSITNKPIVGCTCEEDNSA


Parental protein
VIWFWLHKGETQRCPSCGAHYKL-VPHQLAH
.IWFWLHKGETQ.C..C..HYKL.VP.QLAH
Retrocopy
LIWFWLHKGETQQCSNC*THYKL/VPPQLAH


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide