RetrogeneDB ID:
retro_ecab_191
Organism:
Horse ( Equus_caballus )
Location:
1:135570552-135571551 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
97.9 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
G3PDH
Parental gene aliases:
GAPDH, G3PDH
Parental gene description:
glyceraldehyde-3-phosphate dehydrogenase [Source:RefSeq peptide;Acc:NP_001157328]

Genomic region (view in browser)





>retro_ecab_191
ATGGTGAATGTCGGAGTAAACGGATTTGGCCGTATTGGGCGCCTGGTCACCAGGGCTGCT
TTTAACTCTGGCAAAGTGGATATTGTCGCCATCAATGACCCCTTCATTGACCTCAACTAC
ATGGTCTACATGTTTCAGTATGATTCCACCCATGGCAAGTTCCATGGCACAGTCAAGGCC
GAGCACGGGAAGCTTGTCATCAACGGAAAGGCCATCACCATCTTCCAGGAGCGAGATCCC
GCCAACATCAAATGGGGCGATGCTGGTGCTGAATATGTTGTGGAGTCCACTGGTGTCTTC
ACTACCTTGGAGAAGGCTGGGGCTCACTTGAAGGGTGGAGCCAAAAGGGTCATCATCTCT
GCTCCTTCTGCTGATGCCCCAATGTTTGTGATGGGCGTGAAACACGAGAAGTATGACAAT
TCCCTGAAGATTGTCAGCAATGCCTCCTGCATCACCAATTGCTTGGCCCCCCTGGCCAAG
GTCATCCATGACCACTTTGGCATCGTGGAGGGACTCATGACCACAGTGCATGCCATCACT
GCCACCCAGAAGACCGTGGATGGCCCCTCTGGGAAGCTGTGGCACGATGGCCGAGGGGCT
GCCCAGAACATCATCCCTGCTTCTACTGGTGCTGCCAAGGCTGTGGGCAAGGTCATCCCT
GAGCTGAATGGGAAGCTCACTGGCATGGCCTTCCGTGTCCCCACCCCTAATGTGTCAGTC
ATGGATCTGACCTGCCGCCTGGAGAAAGCTGCCAAATACGATGAGATCAAGAAGGTGGTG
AAGCAGGCATCGGAGGGCCCCCTCAAGGGCATCCTGGGCTACACTGAGGACCAGGTTGTC
TCCTGCGATTTTAACAGTGACACCCACTCTTCCACCTTTGATGCTGGGGCTGGCATTGCC
CTCAACGACCACTTTGTCAAGCTCATTTCCTGATATGACAATGAATTTGGCTACAGCAAT
AGGGTGGTGGACCTCATGGCCCACATGGCCTCCAAGGAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.12
SRP021940_cerebellum 0.05
SRP021940_embryo 0.31
SRP021940_placental_villous 0.04
SRP021940_synovial_membrane 0.08
SRP021940_testis 0.06

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAEHGKLVINGKAITIFQERDPANIKWGDAGAEYVVESTGVF
MV.VGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAEHGKLVINGKAITIFQERDPANIKWGDAGAEYVVESTGVF
Retrocopy
MVNVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAEHGKLVINGKAITIFQERDPANIKWGDAGAEYVVESTGVF


Parental protein
TTLEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITATQKTVDGPSGKMWRDGRGA
TTLEKAGAHLKGGAKRVIISAPSADAPMFVMGV.HEKYDNSLKIVSNASC.TNCLAPLAKVIHDHFGIVEGLMTTVHAITATQKTVDGPSGK.W.DGRGA
Retrocopy
TTLEKAGAHLKGGAKRVIISAPSADAPMFVMGVKHEKYDNSLKIVSNASCITNCLAPLAKVIHDHFGIVEGLMTTVHAITATQKTVDGPSGKLWHDGRGA


Parental protein
AQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKAAKYDEIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA
AQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV.DLTCRLEKAAKYDEIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA
Retrocopy
AQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVMDLTCRLEKAAKYDEIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA


Parental protein
LNDHFVKLISWYDNEFGYSNRVVDLMAHMASKE
LNDHFVKLIS.YDNEFGYSNRVVDLMAHMASKE
Retrocopy
LNDHFVKLIS*YDNEFGYSNRVVDLMAHMASKE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide