RetrogeneDB ID:
retro_ecab_192
Organism:
Horse ( Equus_caballus )
Location:
1:141084877-141085563 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
50.21 %
Coverage:
98.73 %
Frameshifts:
5
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_192
AACACAGACAGAACTTCAACAAAGACAGAAAATATAAAAAAAGTACCAAACAGAAGTCAC
AGAGCTGAAGAATACAATAACTAAACTGAAAAATACACTACAGGGGTTCAACAGTAGGCT
AGATGAAGTAGAAGAAAGGATCAGTGACCTGGAAGACAGTACCGTGGAACTTACCCAAAC
AGAACAGCAAAAAGAAAAAAGAATTTTAAAAAGCAAAGATAGCTTAAGAGACCTACGGGA
CGAGATCAAGCAGAACAACATTCACGTTATAGGGGTCCAAGAGAGAGAAAGGGACAGAAA
ATTCATTTGAGGAAATAATAGCTGAAAACTTCCCTATTGAGGGAAGGAGACAGACATCCA
GATCTGGGAAGTGCAGAGAGTTCCAAATAAGATGAACCCAAAAAGATCCACACAAAGACA
CATTATAATTAAAATGTGAACTTAGATAAAGAGGAAATCTTAAAAGCAGCAAGAAAAAAA
CAATTTGTTACATACAAGGGAACCTCCATAAGACTATCAGCAGGTTTTCCAGCAGAAATT
TGGCAGGCCAGAAGAGAGGGGCATGATATATTCAAAGTGCTGAAAGCAAAAACCTGCCCA
CCAAGAATACTCTACCCAGCAAGGTTATCAATCAGAATTGAAGGAGAGATAAAGAGTTTT
CCAGCCAAGAAAAGCTAAAGGAGTTC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
HSENFSKETENIRK-YQIEVTELKNTPTELKNTIEGFKSRLDDTEERISGLEDRAVELIQSELSTQNRLEDLAPSPKDCADSMRKCSIRTIGVQEGEE-K
.....S..TENI.K.YQ.EVTELKNT.T.LKNT..GF.SRLD..EERIS.LED..VEL.Q.E............S..D..D......I..IGVQE.E...
Retrocopy
NTDRTSTKTENIKK\YQTEVTELKNTITKLKNTLQGFNSRLDEVEERISDLEDSTVELTQTEQXXXXXXXXXXXSLRDLRDEIKQNNIHVIGVQERER\T


Parental protein
EDGAESVLKEIIAENFPNLG-DEREMCVEEVFRSPRYVNVKRPTARHIVVKL-AKMNDKERILRAARLKK-ITYKGTPIRLSVDFSAETLQARTDWNDIF
E...E....E....NFP..G..E......EV.R.P...N.KR.T.RHI..K........E.IL.AAR.K...TYKGT.IRLS..F.AE..QAR....DIF
Retrocopy
ENSFEEIIAE----NFPIEG/KETDIQIWEVQRVPNKMNPKRSTQRHIIIKM/VNLDKEE-ILKAARKKQFVTYKGTSIRLSAGFPAEIWQARREGHDIF


Parental protein
KTLKDKNLQPRILYPAKISFRYEGEIKSFPEK-QKLRDF
K.LK.K...PRILYPA..S.R.EGEIKSFP.K..KL..F
Retrocopy
KVLKAKTCPPRILYPARLSIRIEGEIKSFPAK/EKLKEF


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide