RetrogeneDB ID:
retro_ecab_195
Organism:
Horse ( Equus_caballus )
Location:
1:165297095-165297621 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
79.21 %
Coverage:
100.0 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
RAN
Parental gene aliases:
No gene alias available
Parental gene description:
RAN, member RAS oncogene family [Source:HGNC Symbol;Acc:9846]

Genomic region (view in browser)





>retro_ecab_195
GCTACCCTGAGTGTTGAGGTCTATCCCCTTATGTTCCATACCAACAGAGGACCTATTAAG
TTCGATGTGTGAGATACAGCTGGTCAGGAGAAATCTGGTGGACTGAGAGCTGGTTATTGT
ATCCAAGCCCCGTGTACCATTATAATGTTTGATGTAACATCAAGAGTTACTTACAAGAAT
GTGCCTAACTGGCAGAGAAATCTGGTACAAGTATGCGAAAACATCCCTGTCGTGTTGTGT
GGCAATAAAGTGGGTATTAGGACAGGAAAATTACGATAAAACCTATTGTCTTCCACCAAA
AGAAGAATCTTCCGTATCACGACATTTCTGCCAAAAGTAACTACGAATTTGAAAAGCCCT
TCCTCTGGCTTGCTAGAAACTCATTGCAGACCCTATCTTGGAGTTTGTCACCACGCCTGC
TCTTGCCCCACCAGAGGTTGTCATGGATCCAGGTTTGGCAGCACAGTATGAGCATGATCT
GGAGGTTGCTCAAACAACTGGTCTCCCGGATGAGGATGATGATCTG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.04
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.42

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
ATLGVEVHPLGFHTNREPIKFNVWDTAGQEKFG-CGTAYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIK-DRKVKAKSIVFH
ATL.VEV.PL.FHTNR.PIKF.V.DTAGQEK.G.....Y.IQA.C.IIMFDVTSRVTYKNVPNW.R.LV.VCENIP.VLCGNKV.I..DRK...K.IVFH
Retrocopy
ATLSVEVYPLMFHTNRGPIKFDV*DTAGQEKSGGLRAGYCIQAPCTIIMFDVTSRVTYKNVPNWQRNLVQVCENIPVVLCGNKVGIR/DRKITIKPIVFH


Parental protein
RKKNLQYYDISAKSNYNFEKPFLWLAR-KLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDDL
.KKNL.Y.DISAKSNY.FEKPFLWLAR.KLI.DP.LEFV..PALAPPEVVMDP.LAAQYEHDLEVAQTT.LPDEDDDL
Retrocopy
QKKNLPYHDISAKSNYEFEKPFLWLAR/KLIADPILEFVTTPALAPPEVVMDPGLAAQYEHDLEVAQTTGLPDEDDDL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide