RetrogeneDB ID:
retro_ecab_196
Organism:
Horse ( Equus_caballus )
Location:
1:166639496-166640032 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
75.54 %
Coverage:
87.44 %
Frameshifts:
3
Stop codons:
2


Parental gene:
Parental gene symbol:
UBE2E3
Parental gene aliases:
No gene alias available
Parental gene description:
ubiquitin-conjugating enzyme E2E 3 [Source:HGNC Symbol;Acc:12479]

Genomic region (view in browser)





>retro_ecab_196
TCCAGTGATAGGCAAAGATCTGACCACAGACACCCAGCTGCTCCAGAGCCTGAAGAACAA
GAAGAAAGAAAACCTGCCACTCAGCAGAAGAAAAACATAAAACTCTCTAGCAAGACCACT
GCTAAATTATCCACTAGTACGAAAAGAATTCAGAAGGAGCTAGGTGAAATCTCCCTTGAT
CCTCTTGCTAACCGCAGTGCTGGGCCTAAAGGAGATAACATTTATAAATGGAGATTGACT
ATACTTGGTGCATCAGGTTCTGTGTAGGAAGGTGGTGTTTTTTTTCTGGATACCACCATT
TTCATCTGATTATCCATTTAAGCCACCAAAGGTTACTTTTCACACCAGAATCTATCACTG
CAACAACAGTCTAGGACTCATCTGTCTGGACATGCTTGAAGGCAACTGGAGCCCGCCTTA
GACTATTTCAAAGATTTTGCTGTTGATTGGTTCCCTTTTGACAGACTTCAACCTGCAGAT
CCTCTGGTTGAAGCAGAGTTGCTCAGTATTTGACCAACAGAGCAGAACATGACAAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
SSGSSDADQRDPAAPEPEEQEERKPSATQQKKNTKLSSKTTAKLSTSAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDIT
SS.....D.R.PAAPEPEEQEERKP.ATQQKKN.KLSSKTTAKLSTS.KRIQKEL.EI.LDP..N.SAGPKGDNIY.WR.TILG..GSV.EGG...LD.T
Retrocopy
SSDRQRSDHRHPAAPEPEEQEERKP-ATQQKKNIKLSSKTTAKLSTSTKRIQKELGEISLDPLANRSAGPKGDNIYKWRLTILGASGSV*EGGXXXLDTT


Parental protein
-FSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCN-PADPLVG-SIATQYLTNRAEHDR
.FSSDYPFKPPKVTF.TRIYHCN.NS.G.ICLD.L..NWSP..TISK.LL.I.SLLTD.N.PADPLV..S...QYLTNRAEHD.
Retrocopy
\FSSDYPFKPPKVTFHTRIYHCN-NSLGLICLDMLEGNWSPP*TISKILLLIGSLLTDFN/PADPLVE/SRVAQYLTNRAEHDK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide