RetrogeneDB ID:
retro_ecab_197
Organism:
Horse ( Equus_caballus )
Location:
1:168465829-168466054 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
82.67 %
Coverage:
98.68 %
Frameshifts:
0
Stop codons:
2


Parental gene:
Parental gene symbol:
SNRPG
Parental gene aliases:
No gene alias available
Parental gene description:
small nuclear ribonucleoprotein polypeptide G [Source:HGNC Symbol;Acc:11163]

Genomic region (view in browser)





>retro_ecab_197
GTGAGCAAAGTTCACCCTCCCGAGTTGAAAAAGTTTATGGACAAGAAGTTATCATTGAAA
TTAAACGGTGGCAGATGTGTCTGAGGAACACTGCAGGGATTTGATCCCTTTATGGATCTT
GTGATAGATGAATGTGTGGAGATAGCAACTAGTGGGCAAGAGAACAATATTGGAACGGTG
GTAATGTGAGGAAATAGTATCATCACATTAGAGGCCTTGGAACGA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEALER
.SK.HPPELKKFMDKKLSLKLNGGR.V.G.L.GFDPFM.LVIDECVE.ATSGQ.NNIG.VV..GNSII.LEALER
Retrocopy
VSKVHPPELKKFMDKKLSLKLNGGRCV*GTLQGFDPFMDLVIDECVEIATSGQENNIGTVVM*GNSIITLEALER


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide