RetrogeneDB ID:
retro_ecab_198
Organism:
Horse ( Equus_caballus )
Location:
1:168625802-168626155 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
72.36 %
Coverage:
71.78 %
Frameshifts:
4
Stop codons:
0


Parental gene:
Parental gene symbol:
RPS10
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S10 [Source:HGNC Symbol;Acc:10383]

Genomic region (view in browser)





>retro_ecab_198
ATGTTGATGCCCATGAAGAACTGGATTGCCATTTATGAACTTCTTTTGAAGGAGACAGTC
ATGTTGCCAAGAAGGACGTCAACATGCCAAAGCACCCCAAGCTGGCAGGAAAGAATGTGC
CCAATCTTCATGTCACCAAGGCCACGCGGTCTCTCAAGTCACAATGCTACTGAAGAAACG
GTTTGCTGGAGGCATTTCTACTGGTGCCTCACCAACAAGGGTTGCCAGTATCTCCGTGAT
TACCACCATCTGCCCCCTGGGGTCGTGTGTGCCACCCTGCACCACAGCCATCCTGAGACT
GGCAGGCCAGGCCGAAAGGGCTGGAGGGCGAGTGGCCCGCAGGACTCACCAGA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.04
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MLMPKKNR-AIYELPFKEGVM-VAK-DVHMPKHPELADKNVPNLHVMKAMQSLKSRGY-VKEQFA-WRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS
MLMP.KN..AIYEL..KE.VM.VAK.DV.MPKHP.LA.KNVPNLHV.KA..SLKS..Y..K..FA.WRHFYW.LTN.G.QYLRDY.HLPP..V.ATL..S
Retrocopy
MLMPMKNWIAIYELLLKETVM/VAKKDVNMPKHPKLAGKNVPNLHVTKATRSLKSQCY/LKKRFA/WRHFYWCLTNKGCQYLRDYHHLPPGVVCATLHHS


Parental protein
RPETGRP-RPKGLEGERPARLTR
.PETGRP.RPKGLEGE.PA.LTR
Retrocopy
HPETGRP/RPKGLEGEWPAGLTR


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide