RetrogeneDB ID:
retro_ecab_199
Organism:
Horse ( Equus_caballus )
Location:
1:171681561-171681862 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
84.31 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
SUMO1
Parental gene aliases:
No gene alias available
Parental gene description:
small ubiquitin-like modifier 1 [Source:HGNC Symbol;Acc:12502]

Genomic region (view in browser)





>retro_ecab_199
ATGTCTGCCCAGGAGGCAGAACCTTCAACTGAGGATTTGGGGTATCAGAAGGAAGGGGAA
GACATAAAACTGAAAGTCATTGGACAGGATAGCAGTGAGATTCACTTCCAAGTGACAATG
ACGACACATCTCAAGGAACTCAAAGAGTCACACTGTCAAAGACAGGGAGTTCCAATGAAT
TCCCCTCAGGTTTCTCTTTGAAGGTCAGAGAATTGCTGATAATCACACTCCAAAAGAACT
GGGGATGGAGGAAGAAGATGTGATCGAAGTTAATCAGAACAAACGGGGTCACTCGACAGT
T

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNS-LRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGGHS
MS.QEA.PSTEDLG..KEGE.IKLKVIGQDSSEIHF.V.MTTHLK.LKES.CQRQGVPMNS.LRFLFEGQRIADNHTPKELGMEEEDVIEV.Q....GHS
Retrocopy
MSAQEAEPSTEDLGYQKEGEDIKLKVIGQDSSEIHFQVTMTTHLKELKESHCQRQGVPMNS\LRFLFEGQRIADNHTPKELGMEEEDVIEVNQNKR-GHS


Parental protein
TI
T.
Retrocopy
TV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide