RetrogeneDB ID:
retro_ecab_2
Organism:
Horse ( Equus_caballus )
Location:
X:71435901-71437050 (+)
Status:
KNOWN_PROTEIN_CODING
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary
Identity:
67.4 %
Coverage:
55.15 %
Frameshifts:
0
Stop codons:
0
Parental gene:
Parental gene symbol:
PABPC4
Parental gene aliases:
No gene alias available
Parental gene description:
poly(A) binding protein, cytoplasmic 4 (inducible form) [Source:HGNC Symbol;Acc:8557]
Genomic region (view in browser)
>retro_ecab_2
ATGGGGAGTGGGGAGCCTAATCCTGCTGGCAAGAAGAAGAAGTACCTCAAGGCTGCCCTG
TACGTGGGTGACTTGGACCCAGATGTCACCGAGGACATGTTATATAAAAAGTTCAGGCCT
GCTGGCCCTCTGCGCTTCACCCGAATCTGCCGTGACCCGGTGACCCGCAGCCCCCTGGGC
TATGGCTATGTCAACTTTCGCTTTCCTGCGGATGCTGAGTGGGCTCTGAACACCATGAAT
TTTGATTTGATTAATGGCAAACCATTCCGCCTCATGTGGTCTCAGCCAGATGACCGCTTA
AGAAAGTCTGGGGTTGGAAATATATTCATCAAAAATCTGGACAAATCCATAGACAATAGG
GCCCTTTTTTATTTATTTTCTGCTTTTGGGAACATTCTCTCCTGCAAAGTCGTATGTGAT
GACAACGGCTCTAAAGGTTATGCCTATGTGCACTTTGACAGTCTGGCGGCTGCCAATAGG
GCCATCTGGCATATGAATGGAGTGCGGCTCAACAACCGCCAGGTGTATGTTGGCCGATTC
AAATTTCCGGAAGAGCGGGCAGCTGAAGTCAGAACCAGAGATAGAGCAACTTTCACCAAT
GTTTTCGTTAAAAATTTTGGAGATGACATGGATGACGAAAAACTGAAGGAAATTTTCAGT
GAATATGGGTCAACTGAGAGTGTGAAGGTAATAAGAGATGCCAGTGGGAAATCTAAAGGC
TTTGGATTTGTGAGATATGAGACACATGAGGCTGCCCAAAAGGCTGTGTTAGACCTGCAT
GGAAAGTCCATCGATGGAAAAGTCCTATATGTAGGGCGAGCACAGAAGAAAATTGAACGT
CTGGCTGAGTTAAGGCGAAGATTTGAACGGCTGAGATTAAAGGAAAAAAGTCGGGCTCCG
GGAGTGCCTATCTATATTAAGAACCTGGATGAGACCATTGATGATGAAAAACTGAAGGAG
GAATTTTCTTCCTTTGGATCAATTAGCCGGGCCAAAGTGATGGTGGAAGTGGGGCAAGGC
AAAGGGTTTGGTGTTGTCTGCTTCTCCTCTTTCGAGGAGGCTACCAAAGCAGTGGATGAG
ATGAATGGTCGCATAATGGGCTCCAAGCCCCTGCATGTCACCCTGGGCCAGGCCAGGCGT
AGGTGGTGA
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.17 |
| SRP021940_cerebellum | 2.29 |
| SRP021940_embryo | 3.71 |
| SRP021940_placental_villous | 0.49 |
| SRP021940_synovial_membrane | 1.02 |
| SRP021940_testis | 0.47 |
Parental protein coverage
Changes in the retrocopy sequence
