RetrogeneDB ID:
retro_ecab_20
Organism:
Horse ( Equus_caballus )
Location:
7:59300000-59300522 (-)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
88.44 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
PTP4A1
Parental gene aliases:
No gene alias available
Parental gene description:
protein tyrosine phosphatase type IVA, member 1 [Source:HGNC Symbol;Acc:9634]

Genomic region (view in browser)





>retro_ecab_20
ATGGCTCCAATGAACTGCCTAGCCCCTGTGGAAGTCGCATACAGGAACATGAGATTTCTT
ATTACACACAATCCAACCAGTGCAACCTTAAACAGATTTATAGAGGAACTTAAGGAATAT
GGAGTTACCACAATAGTAAGAGTATGTGAAGCAACTTATGACACTGCTGTCGTGGAGAAA
GAAGGCATCCAGGTTCTGGATTGGCCTTTTGATGACGGCTCATCGCCCTCTAACCAGATT
GTTGATGACTGGTTAAGTCTTGTAAATAGTAAATTTCGTGAAGAACCTGGTTGTTGCATT
GCCGTTCACTGTGTTACAGGTCTTGGGAGAACTCCAGTGCTTGTTGCCCTAGCATTAATT
GAAGGTGGGATGAAAAATGAAGATGCAGTACAGTTTATAAGACAAAAGCGGCGGGGAGCT
TTTAACAGCAAGCAACTTTTGTATTTGGAGAAATACCGTTCTAAAATGCGGCTGCGCTTC
AAAGACTCCTGGGGTCATAGAAACAACTGTTGCGTTCAATAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.03
SRP021940_testis 25.75

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MARMNRPAPVEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDWPFDDGAPPSNQIVDDWLSLVKIKFREEPGCCI
MA.MN..APVEV.Y.NMRFLITHNPT.ATLN.FIEELK.YGVTTIVRVCEATYDT..VEKEGI.VLDWPFDDG..PSNQIVDDWLSLV..KFREEPGCCI
Retrocopy
MAPMNCLAPVEVAYRNMRFLITHNPTSATLNRFIEELKEYGVTTIVRVCEATYDTAVVEKEGIQVLDWPFDDGSSPSNQIVDDWLSLVNSKFREEPGCCI


Parental protein
AVHCVAGLGRAPVLVALALIEGGMKYEDAVQFIRQKRRGAFNSKQLLYLEKYRPKMRLRFKDSNGHRNNCCVQ
AVHCV.GLGR.PVLVALALIEGGMK.EDAVQFIRQKRRGAFNSKQLLYLEKYR.KMRLRFKDS.GHRNNCCVQ
Retrocopy
AVHCVTGLGRTPVLVALALIEGGMKNEDAVQFIRQKRRGAFNSKQLLYLEKYRSKMRLRFKDSWGHRNNCCVQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide