RetrogeneDB ID:
retro_ecab_200
Organism:
Horse ( Equus_caballus )
Location:
1:175105924-175106163 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
64.29 %
Coverage:
50.61 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
BTF3
Parental gene aliases:
No gene alias available
Parental gene description:
basic transcription factor 3 [Source:HGNC Symbol;Acc:1125]

Genomic region (view in browser)





>retro_ecab_200
CAGGAATCTCTGGCAGCCAACATCTTCACCATTACAGGCCATGCTGGGACAAAGCTGCCG
ACAGAAATGCCAGCAGCATCTGAAACCAGCTTGGTGCAGACAGTGACTGGTTTAAGGAGA
CTGGCTGAAGCTCTGCCCAAATAATCTGTGGATGGGAAACCCTGCTTGCCACTGGAGAGG
AGGATGAAGTTTCAGATCTTGTGCAGAATGGTGCTGAGGCTTCCAGGAAGGAAGCAAAT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
QASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGK-APLATGEEDDDEVPDLVENFDEASKNEAN
Q.SLAAN.FTITGHA.TK..TEM.P...........T.LRRLAEALPK.SVDGK...LATGEE..DEV.DLV.N..EAS..EAN
Retrocopy
QESLAANIFTITGHAGTKLPTEM-PAASETSLVQTVTGLRRLAEALPK*SVDGK/TLLATGEE--DEVSDLVQNGAEASRKEAN


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide