RetrogeneDB ID:
retro_ecab_201
Organism:
Horse ( Equus_caballus )
Location:
1:175511918-175512679 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
68.08 %
Coverage:
87.29 %
Frameshifts:
3
Stop codons:
5


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_201
ATAAGGATGCTCACCGATCTTGGGAGAAGAATGGATGAACTCAGTGAGAACTTTAACAAA
GAGCTGGAAAATATAAAAAATAATCAATCAGAAACGAAGAATACTGGAAATGAAAAATTC
ACTAGAGGGACTCAAAAGCAGAGTAGATGCTACAGAAGAACGATCAGTGAGCTGGACAAA
AGACTAGAAGAAATCACCCAAACTGAACAGATAAAAGAAAAAAGAATGAGGACAGTCTAC
AGGACCTCTAGGACAACATCAAGTGTACTAACATCCATATTATAGGTGTCCCAGAAGGAG
AAGAGAGAGACAAAGGGGCAGAGAATCTATTTGAAGATATAATAGCTTAAAACTTTCCTA
ACCTAAAGAAGGAAACAGACATCCCAATACAGGAAACACAGAAAGCACCAAACAAGATAA
ACCCAAAGAGGCCCACACCAAAACACATTATAATTAAAACGTCAGGAATTAAAGATAAAG
AGAGAATCCTAAAAGCTCCAAGAGAAGGGCAACAAGTGACATACAAAGGAAGCCCCATAA
GACTATCAGCTGACTTCTAAGAATAAACCTTATAGGCTAGAAGGGAATGGCATGATATAT
TTAAAGTGATGAAAGGAAAAAACCTACAGCCAAGAATGCTCTACCTGGCAAGGTTATCAT
TCAGAATGGAAGGAGAGACAAAGGGTTTCCCAGACAAGCTAAAACTAAAGAAGTTTATCA
CCAAGAAACCAGCCTTACAAAAAATGCTAAAGGGATTTATT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VKLLTDLGRRMDEHSENFNKELENIKKQSE-MKNTIMEMKNSLEGLNSRVDDTEER-ISKLDERLEEVTQAEQI-KEKMKKTDSLRDLWDNIKCTKIRIT
...LTDLGRRMDE.SENFNKELENI.K.....K..I.EMKNSLEGL.SRVD.TEER.IS.LD.RLEE.TQ.EQI.K.K.K..DSL.DL.DNIKCT.I.I.
Retrocopy
IRMLTDLGRRMDELSENFNKELENI-KNNQ\QKRRILEMKNSLEGLKSRVDATEER/ISELDKRLEEITQTEQI/KRK-KNEDSLQDL*DNIKCTNIHII


Parental protein
GVPE-EEGDKGAE-IYLIKIAENFPKLQKEADFQVQEAQNAPNRINPKRHTPRHIINKISNPGRNKERILKAARERQQVTYKGNSIRLSADLSAETLQAR
GVPE.EE.DKGAE......IA.NFP.L.KE.D...QE.Q.APN.INPKR.TP.HII.K.S.....KERILKA.RE.QQVTYKG..IRLSAD....TL.AR
Retrocopy
GVPEGEERDKGAENLFEDIIA*NFPNLKKETDIPIQETQKAPNKINPKRPTPKHIIIKTSGI-KDKERILKAPREGQQVTYKGSPIRLSADF*E*TL*AR


Parental protein
RKWHSIFKVLNRKK-PPRILYLARSSFIMEGEIKCFPDKQKLKEFITKKPALQEMLKGLI
R.WH.IFKV...K...PR.LYLAR.SF.MEGE.K.FPDK.KLK.FITKKPALQ.MLKG.I
Retrocopy
REWHDIFKVMKGKNLQPRMLYLARLSFRMEGETKGFPDKLKLKKFITKKPALQKMLKGFI


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide