RetrogeneDB ID:
retro_ecab_204
Organism:
Horse ( Equus_caballus )
Location:
1:183654641-183654959 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
99.06 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_204
ATGGTCAACGTCCCTAAAACGCGAAGGACTTTCTGTAAGAAGTGTGGGAAGCACCAGCCG
CACAAAGTGACCCAGTACAAGAAGGGCAAGGACTCGCTGTACGCGCAGGGCAAGAGGCGC
TACGACCGCAAGCAGAGCGGCTACGGCGGGCAGACGAAGCCCATCTTCCGGAAGAAGGCC
AAGACCACCAAGAAGATCGTGCTGAGGCTCGAGTGCGTGGACCCTAACTGCAGGTCCAAG
AGGATGCTGGCCATTAAGAGGTGCAAGCATTTCGAACTGGGAGGAGACAAGAAGAGGAAG
GGCCAAGTGATCCAGTTC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 47.04
SRP021940_cerebellum 43.76
SRP021940_embryo 36.58
SRP021940_placental_villous 64.26
SRP021940_synovial_membrane 55.37
SRP021940_testis 291.52

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRK
MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECV.PNCRSKRMLAIKRCKHFELGGDKKRK
Retrocopy
MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVDPNCRSKRMLAIKRCKHFELGGDKKRK


Parental protein
GQVIQF
GQVIQF
Retrocopy
GQVIQF


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide