RetrogeneDB ID:
retro_ecab_207
Organism:
Horse ( Equus_caballus )
Location:
10:8230157-8230663 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
50.57 %
Coverage:
100.0 %
Frameshifts:
5
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_207
ATGAAGAATCAGGCAAAGATGTTCCAAACAAAAGGAACAAGATAAATCTTCAGAAACCAA
CCCTAATGAAATGGAGTTATATGATTTACCTGACAGAGAAATAAAAATAACCATCATGAA
GATGCTTACCAAGGTTAGGAAAACAGTGTGTGAACAATGTGAAAATGTCCACAAAGAGAT
AGAAAATATAAAAATGTACAAATAGAAATCATAAATCTGAAGAATACAATACGTGTACTA
AAAAAATCAACAGAGAGCTTCAACATCAGACTAGATGAAGCGGAATAAATGATCAGCGAA
CTGGAAGACAGGTCATTGGAAATAATTCAGAGGAGTAAAAAGAAAAAAGAATGAAAAGGA
GTGATGAAAGCTTAAAGGACTTAATGGGATACCACCAAGTGGGCCAATATATGTGTCATG
GGAGCCCCAGAGGAGAAGAGAAAGGACCAGAAAGTTTATTCAAAGAAATAACAACTGAAA
ACTTCCTAAATCTTGAGAGATGGACA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MKKQGNMFQ-MKEQDKP-ENNLNEMEVSNLPNKEFQVKVIKMLTKLKRRMDEHSGNFNKETDSI-RKCQIEVTELKNTIPELTNTLEGFNSRLDEAEERI
MK.Q..MFQ..KEQDK..E.N.NEME...LP..E......KMLTK......E...N..KE...I....QIE...LKNTI..L....E.FN.RLDEAE..I
Retrocopy
MKNQAKMFQ\QKEQDKSSETNPNEMELYDLPDREIKITIMKMLTKVRKTVCEQCENVHKEIENI/KNVQIEIINLKNTIRVLKKSTESFNIRLDEAE*MI


Parental protein
SELNDRAELTQSEQQK-EKRMKNTDNSLREL-WDNIKHANIRIIGVPE-GEERDKGAENLFVEIIQENFPNLRKET
SEL.DR.........K.EKRMK..D.SL..L.WD..K.ANI...G.PE.GEE..KG.E.LF.EI..ENF.NL...T
Retrocopy
SELEDRSLEIIQRSKK/EKRMKRSDESLKDL\WDTTKWANICVMGAPE/GEE--KGPESLFKEITTENFLNLERWT


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide