RetrogeneDB ID:
retro_ecab_208
Organism:
Horse ( Equus_caballus )
Location:
10:8237262-8237537 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
50.52 %
Coverage:
54.71 %
Frameshifts:
4
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_208
ATAACAGAAATAAAAACTTCACTAGAGGGAATTAACAGCAGATTTGAGCAGCCAGAAGAA
AGAATGAGTGAATTGAAGATAGGTCAATTGATAATCTATTTGAGTAACAGAAAGAAAAAA
GAATGAAGGAAAATTAACACAACCTCAGAGACCTGTGGAACACCATTGAGCTTCTCAACA
CATGCATAATAGAGTCACAGAAGGTGAAGAGAGAGAGAAAGGGTATAAAGAATATTTCAA
GAAATAATGTTTGAAAATTCCCAAATTCAATGAAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
IPELTNTLEGFNSRLDEAEERISELN-DRAELTQSEQQKEKRMKNTDNSLRELWDNIKHANIRII-GVPEGEERDKGAE-NLFVEIIQEN-FPNLRK
I.E....LEG.NSR....EER.SEL..DR......E.QKEKRMK.....LR.LW..I...N..II..V.EGEER.KG.....F.EI..EN.FPN..K
Retrocopy
ITEIKTSLEGINSRFEQPEERMSELK/DRSIDNLFE*QKEKRMKEN*HNLRDLWNTIELLNTCII/RVTEGEEREKGYK/RIFQEIMFEN/FPNSMK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide