RetrogeneDB ID:
retro_ecab_209
Organism:
Horse ( Equus_caballus )
Location:
10:10683466-10683880 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
83.33 %
Coverage:
51.49 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
PPHLN1
Parental gene aliases:
No gene alias available
Parental gene description:
periphilin 1 [Source:HGNC Symbol;Acc:19369]

Genomic region (view in browser)





>retro_ecab_209
GAAGAGAGACCTGTTCAGTCTGTGAAAACATCAGGAGACACTTCACCCTCAAGTTCTTCG
GCAGTTCCTTCATCAAAGGTGTTAGACAAACCCAGTAGGCTGACTGAAAAGGAACTTGCT
GAGGCTGCAAACAACTGGGCTGCTGGAAACCTAGGGAAGGCAATTGAAAGCAACTTACCT
GAAATTTCTGAGTACGAGGCGGGACCCACGGCGCCATCGCTCATTGACCAGCCCGAAGGA
CCTGAGTCAAACGCAACAGATGGCACAGAATTATTCGAAGACAGTCAGCTCGCCAGTTGC
TCTAAAGCAGCAGCATCAAAAACCAAAGAGATTGAACAGGTTTATGGACAAGACTGTGAA
ATTTTCAGGATGGTGGCAAAAATGCTGATCGAAAAAGAGCCTTCATTAGAAAAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.15
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KERPVQSLKTSRDTSPSSSSAVPSSKVLDKPSRLTEKELAEAASKWAAEKLEKADESNLPEISEYEAGSTAPLFIDQTEEPESNATDGIELFEDSQLTSR
.ERPVQS.KTS.DTSPSSSSAVPSSKVLDKPSRLTEKELAEAA..WAA..L.KA.ESNLPEISEYEAG.TAP..IDQ.E.PESNATDG.ELFEDSQL.S.
Retrocopy
EERPVQSVKTSGDTSPSSSSAVPSSKVLDKPSRLTEKELAEAANNWAAGNLGKAIESNLPEISEYEAGPTAPSLIDQPEGPESNATDGTELFEDSQLASC


Parental protein
SKAIASKTKEIEQVYRQDCETFGMVVKMLIEKDPSLEK
SKA.ASKTKEIEQVY.QDCE.F.MV.KMLIEK.PSLEK
Retrocopy
SKAAASKTKEIEQVYGQDCEIFRMVAKMLIEKEPSLEK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide