RetrogeneDB ID:
retro_ecab_21
Organism:
Horse ( Equus_caballus )
Location:
3:42997462-42998629 (-)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
85.27 %
Coverage:
99.23 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
PDHA1
Parental gene aliases:
No gene alias available
Parental gene description:
pyruvate dehydrogenase (lipoamide) alpha 1 [Source:HGNC Symbol;Acc:8806]

Genomic region (view in browser)





>retro_ecab_21
ATGCTCGCTGCCGCCGTCTCCCGCGTGTTGGGAGGAGGGGCCCAGAAGCCCGCTAGCAGA
GTGCTGGTGGCGTCCTGTAACTATTCAAATGATGCCACATTTGAAATTAAGAAATGTGAT
CTTCATCGGTTGGAAGAGGGTCCGCCTGTCACAGCAGTGCTCACCCGGGAGGATGGGCTC
CAGTACTACAGGATGATGCAGACTGTTCGCCGAATGGAATTGAAGGCAGATCAGCTGTAT
AAACAGAAATTTATTCGTGGTTTCTGCCACTTGTGTGATGGTCAGGAAGCTTGTTATGTG
GGCCTTAAGGCCGGGGCAAATCCCTCCGATCACGCGATCACAGCCTATCGGGCTCACGGC
TTATGCTACGCTTACGGACTTTCTGTGCAATCAATTCTTGCAGAGCTGACTGGACGAAGA
GGAGGTTGTGCTAAAGGAAAAGGAGGATCGATGCATATGTACGGCAGGAACTTCTATGGG
GGCAACGGCATTGTTGGTGCTCAGGTACCCCTGGGAGCTGGTGTTGCTCTGGCCTGTAAA
TATAAGGGAAGCAATGAGGTCTGTTTGACTCTGTATGGGGATGGTGCTGCTAATCAGGGT
CAGATATTTGAAGCTTATAATATGGCAGCTTTGTGGAAATTACCTTGTATTTTCATCTGT
GAGAATAATCGCTATGGAATGGGAACAGCTATTGAGAGAGCATCAGCCAGCACTGACTAC
TACAAGAGAGTTAATTTTATCCCTGGACTAAGGGTAGATGGAATGGATGTCCTATGTGTT
CGAGAGGCAGCTAAGTTTGCAGCTGACTACTGTAGATCTGGAAAGGGACCCATAGTGATG
GAGCTGCAGACATACCGTTATCATGGGCATAGTATGAGTGATCCTGGAATCAGTTATCGT
ACCAGAGAGGAAATTCAGAACATAAGAAGTAAGAGTGATCCCATTATGCTTCTCAAAGAT
AAAATGTTGAACAACAAGCTTTCCAGTATTGAAGAATTGAAAGAAATTGATGTTGGAGTG
AGGAAAGAAATTGATGATGCAGCCCAGTTTGCTACAACTGATCCAGAGCCACCACTGGAA
GAATTAGGCCATCATGTCTACAACAATAATCTACCTTTTGAAGTTCGTGGTACAAATCAG
TGGATCAAGTTTAAGTCCATCAGTTAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.09
SRP021940_synovial_membrane 0.0
SRP021940_testis 81.17

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MLAAVSRVLSGVAQKPASRVLVASRSFANDATFEIKKCDLHRLEEGPPVTTVLTREDGLRYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVG
..AAVSRVL.G.AQKPASRVLVAS....NDATFEIKKCDLHRLEEGPPVT.VLTREDGL.YYRMMQTVRRMELKADQLYKQK.IRGFCHLCDGQEAC.VG
Retrocopy
LAAAVSRVLGGGAQKPASRVLVASCNYSNDATFEIKKCDLHRLEEGPPVTAVLTREDGLQYYRMMQTVRRMELKADQLYKQKFIRGFCHLCDGQEACYVG


Parental protein
LEAGINPTDHLITAYRAHGFTFTRGLSVREILAELTGRRGGCAKGKGGSMHMYAKNFYGGNGIVGAQVPLGAGIALACKYFGKDEVCLTLYGDGAANQGQ
L.AG.NP.DH.ITAYRAHG.....GLSV..ILAELTGRRGGCAKGKGGSMHMY..NFYGGNGIVGAQVPLGAG.ALACKY.G..EVCLTLYGDGAANQGQ
Retrocopy
LKAGANPSDHAITAYRAHGLCYAYGLSVQSILAELTGRRGGCAKGKGGSMHMYGRNFYGGNGIVGAQVPLGAGVALACKYKGSNEVCLTLYGDGAANQGQ


Parental protein
IFEAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHSMSDPGVSYRT
IFEAYNMAALWKLPCIFICENNRYGMGT..ERA.ASTDYYKR..FIPGLRVDGMD.LCVREA..FAA.YCRSGKGPI.MELQTYRYHGHSMSDPG.SYRT
Retrocopy
IFEAYNMAALWKLPCIFICENNRYGMGTAIERASASTDYYKRVNFIPGLRVDGMDVLCVREAAKFAADYCRSGKGPIVMELQTYRYHGHSMSDPGISYRT


Parental protein
REEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQFATADPEPPLEELGHHIYSSDPPFEVRGANQWIKFKSIS
REEIQ..RSKSDPIMLLKD.M.N..L.S.EELKEIDV.VRKEI.DAAQFAT.DPEPPLEELGHH.Y....PFEVRG.NQWIKFKSIS
Retrocopy
REEIQNIRSKSDPIMLLKDKMLNNKLSSIEELKEIDVGVRKEIDDAAQFATTDPEPPLEELGHHVYNNNLPFEVRGTNQWIKFKSIS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide