RetrogeneDB ID:
retro_ecab_210
Organism:
Horse ( Equus_caballus )
Location:
10:13210758-13211200 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
71.52 %
Coverage:
95.48 %
Frameshifts:
3
Stop codons:
1


Parental gene:
Parental gene symbol:
FUNDC1
Parental gene aliases:
No gene alias available
Parental gene description:
FUN14 domain containing 1 [Source:HGNC Symbol;Acc:28746]

Genomic region (view in browser)





>retro_ecab_210
ATGGTGACCCAGAAGCCCCCTCCCCAAAAAACACGAAAGTGATGATGATTCTTATGAAGT
GTTGGATTTAAATGGGCAGGCAAGGAGATGCCATTGGTAGAATCAAGTGCTTGGCCACAG
TTCCAGACCTATTGTACAAAAAATTCTCAGTAGCCATTCAAATTATAGTGGGTGGAGTGA
CAGGCTGGTGTGCGGGATTTTTGTTCCAGAAAGTTGGGAAACTTCCAGAAACTGAAGTAG
GTGGCGGCTTTCTTCTCCTTCAGATTGCCAGTCTGGCTATGTGCAGAGCTACTGGAAGAG
AGTTGAAAAAGAATTAAACAAAGCAAAAAGACAAACTGAGAAATCAGCAAATAAGGCAGC
ACCAGAAATCAACAATATAATTGAGGAAGTAGCAGAATTTGTCAAACATAACATTGTGAT
ATCCAGTGGATTTGTGGGAGGG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MATRNPPPQE-YESDDDSYEVLDLTEYARRHHWWNRVFGHSSGPMVEK-YSVATQIVMGGVTGWCAGFLFQKVGKLAATAVGGGFLLLQIAS-HSGYVQI
M.T..PPPQ...ESDDDSYEVLDL...ARR.HW.N.V.GHSS.P.V.K..SVA.QI..GGVTGWCAGFLFQKVGKL..T.V.GG..LL......SGYVQ.
Retrocopy
MVTQKPPPQK\HESDDDSYEVLDLNGQARRCHW*NQVLGHSSRPIVQK\FSVAIQIIVGGVTGWCAGFLFQKVGKLPETEV-GGGFLLLQIA/QSGYVQS


Parental protein
DWKRVEKDVNKAKRQIKKRANKAAPEINNIIEEATEFVKQNIVISSGFVGG
.WKRVEK..NKAKRQ..K.ANKAAPEINNIIEE..EFVK.NIVISSGFVGG
Retrocopy
YWKRVEKELNKAKRQTEKSANKAAPEINNIIEEVAEFVKHNIVISSGFVGG


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide