RetrogeneDB ID:
retro_ecab_212
Organism:
Horse ( Equus_caballus )
Location:
10:19170667-19170930 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
70.0 %
Coverage:
73.55 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
RPA3
Parental gene aliases:
No gene alias available
Parental gene description:
replication protein A3, 14kDa [Source:HGNC Symbol;Acc:10291]

Genomic region (view in browser)





>retro_ecab_212
GACGAGATGGAATTGCTCAGGGGGTGCCATCAATGCCAGATGCTAGCTCAGTTCATCAAG
TGGCCCATTTGCTTTGTCAGGAGGTTGGAAAAGATTCATCCCACTGGAAAAATGTTTATT
TTTTCAGAGGAGGGAAAAAATGGAACCATTGAATTGATGGAGCCCCTGATGAAGAAATCT
CTAGAATCATGGAATTAGTTGGAAGAAGAACAGCCAAAGCAACTATCACGTGTGCATGTT
ATATCCAGTTTAAAGAAGATAAC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.04
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.06

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
DVMELPKSRINASLLAQFIDRPVCFVGRLEKIHPTGKMFILSDGEGKNVTIELMEPL-DEEISGIVEVVGKVTAKATIMCASYVQFKEDN
D.MEL.........LAQFI..P.CFV.RLEKIHPTGKMFI.S..EGKN.TIELMEPL.DEEIS.I.E.VG..TAKATI.CA.Y.QFKEDN
Retrocopy
DEMELLRGCHQCQMLAQFIKWPICFVRRLEKIHPTGKMFIFSE-EGKNGTIELMEPL/DEEISRIMELVGRRTAKATITCACYIQFKEDN


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide