RetrogeneDB ID:
retro_ecab_214
Organism:
Horse ( Equus_caballus )
Location:
10:22090469-22091280 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
60.71 %
Coverage:
100.0 %
Frameshifts:
3
Stop codons:
5


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_214
AATGAAACAGAAATAAACAAGCTACCTGAGAAAGAGTTCAAGCAAAAAGTCATAAGGATG
CTCTCTGATCTTTGGAAAAGAATGGATAAACTCAATGAGAACTTGAACAAAGAATTGGAA
AATAGAAAATAGAACAATTTGGAAATGAGGAATACAATACCGAAAATGAAAAATTCGCTA
GAGGCACTCAATAGCAAAGTAGATGATATAGAAGAATGATTCAGTGAGCAGGACGAAAGA
CTAGAGGAAATCCACCCAAGCTGAACAGATAAAAGAATTAAAAATAACAAGAACAGTTTA
AGGGACCTCTGGGGCAACATCAAGCACACTAACATTAGTATTATAGGTGTTCCAGAAGGA
GAAGAGAAAGATAAAGGGGTAGAGAATCTATTCAAAGAAATAATAGCTGAAATTTTTCCT
TACTTAAGGAAGGAAATACATCCAAATACAAGAAGCACAGAGAGCACCTAACAAGATAAA
CCCAAAGAGGCCCACAGCAAGAGACATTATAATTAAAATGTCAAGAATTAAAGATAAAGA
GAGAATCTTAAAATCTGCAAGAGAAAGGCAACAAGTTACATACAAAGGAAACCCCATAAG
GCTATCAGCTGACCTCACAGAAGAAACCTTACAGAAGTAGCATGATGTATTTAAACTGCT
GAAAGGGAAAAATGTACAGCCAAGAATACTCTACCTGGTAAGGCTATCATTCAGAATGGA
AGGAGAGATAAAGAGTTTCCCAGACATGTAAAATTTAAAGGAGTTCATCAACAAGAAACA
AGTTTTATAACAAATGCTAAAGGGACTTATT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
NETEINNLPDKEFKQKVIRMLTDLGRRMDEPSGNFNKELENIKKNQSKNKHRLKQKTTHQLGKNICKDSIAQERTNKLDKRLEEI-TQADQIKEKRI-KK
NETEIN.LP.KEFKQKVIRML.DL..RMD....N.NKELEN.K.N..................N...D.I..E.....D.RLEEI.TQA.QIKE..I..K
Retrocopy
NETEINKLPEKEFKQKVIRMLSDLWKRMDKLNENLNKELENRK*NNLEMRNTIPKMKNSLEALNSKVDDI-EE*FSEQDERLEEI\TQAEQIKELKI/NK


Parental protein
NEDGLRDLWNNIKHTNIHIIDVPEGEERDKGAENLFGEIIAENFPNLR-RKYPGEAQRAPNKINPKRP---TPRHIIIKMSKSKDKERILNALRERQQVT
N...LRDLW.NIKHTNI.II.VPEGEE.DKG.ENLF.EIIAE.FP.LR.RKY....Q.A....N...P...T.R.IIIKMS..KDKERIL...RERQQVT
Retrocopy
N--SLRDLWGNIKHTNISIIGVPEGEEKDKGVENLFKEIIAEIFPYLR\RKYI-QIQEAQRAPNKINPKRPTARDIIIKMSRIKDKERILKSARERQQVT


Parental protein
YKGNPIRLSANFSAETLETRREWHDILKVLKGKNLQPRILYSARLSF-MEGEIE-FPDKQNLEEFITKKPALQEMLNGLI
YKGNPIRLSA....ETL......HD..K.LKGKN.QPRILY..RLSF.MEGEI..FPD..NL.EFI.KK..L..ML.GLI
Retrocopy
YKGNPIRLSADLTEETLQ---K*HDVFKLLKGKNVQPRILYLVRLSFRMEGEIKSFPDM*NLKEFINKKQVL*QMLKGLI


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide