RetrogeneDB ID:
retro_ecab_215
Organism:
Horse ( Equus_caballus )
Location:
10:36267306-36267715 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
67.13 %
Coverage:
62.39 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
PRDX6
Parental gene aliases:
No gene alias available
Parental gene description:
peroxiredoxin 6 [Source:HGNC Symbol;Acc:16753]

Genomic region (view in browser)





>retro_ecab_215
CAGGATATCAATGTTTACAGTGGTAAGAAGCCCACAGAAATGTTACTTTTTCCCATCATT
GATGAAAAGGATTAGGACCTGGCCATTGTGTAGGTATGATGAATCCAGTAGAGAAAAGGA
ACAGGGCATGCCTGTGACAGCATGTGTGGTGTTTATTTTTGGTCCTAATAAGAAACTGAA
GTTATCTATCCTCTACACAGCCGCCACTGGCAGATGCTTTGATGAGATTCTTGGAGTAGC
TATTTCTCTCCAGCTGACAGCCAAAAAGTGGTTTGACACCCTGGTTGATTGGAAGAATGG
AGATAGCATGGTGGTCCTTCCAATCATCCCTTCCAAACTTTCCCCTAAAGGAGTCGTCAC
CAAAGAGCTCCTATCTGGCAAGAAATACCTCTGCTACCCTCCCAAGCCT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KDINAYNGDEPKETLPFPIIDDKNRDLAIL-LGMLDPAEK-DEKGMPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVVISLQLTAEKRVATPVDW
.DIN.Y.G..P.E.L.FPIID.K..DLAI...GM..P.EK..E.GMPVTA.VVFIFGP.KKLKLSILY.A.TGR.FDEIL.V.ISLQLTA.K...T.VDW
Retrocopy
QDINVYSGKKPTEMLLFPIIDEKD*DLAIV/VGMMNPVEK/KEQGMPVTACVVFIFGPNKKLKLSILYTAATGRCFDEILGVAISLQLTAKKWFDTLVDW


Parental protein
KDGDSVMVLPTIPEEEAKKLFPKGVFTKELPSGKKYLRYTPQP
K.GDS..VLP.IP.....KL.PKGV.TKEL.SGKKYL.Y.P.P
Retrocopy
KNGDSMVVLPIIP----SKLSPKGVVTKELLSGKKYLCYPPKP


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide