RetrogeneDB ID:
retro_ecab_219
Organism:
Horse ( Equus_caballus )
Location:
10:58196028-58196346 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
66.98 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_219
CTAGTGAACATTCCTAAAACCTGCCAGACTTCCTATAAGAAGTGTGGCAAGCACTAAACG
CAAAAAGTGACACAGGACAAGAAGGGCAGGGATTCTCTGTATGTTCAGGGAAAGCAGCCT
TATGACAGGAAGCAGAGAGGCTGTGGTGGACAGACTAAGCTGATTTTCCAGAAAAAGGCT
AAAAGTACAAAGACGTTTGTCCTGAAACTTGAGTGCATTGAGCCCAACTGCACATCTAGA
GAATGGTGGCCGATAGGACATGGAGGTGTTTTTGAACTGGGAGGAGATAAGAAGAGAAAG
GGTCAAGTGACCCAGTTC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRK
.VN.PKT..T..KKCGKH...KVTQ.KKG.DSLY.QGK..YDRKQ.G.GGQTK.IF.KKAK.TK..VL.LEC.EPNC.S.....I.....FELGGDKKRK
Retrocopy
LVNIPKTCQTSYKKCGKH*TQKVTQDKKGRDSLYVQGKQPYDRKQRGCGGQTKLIFQKKAKSTKTFVLKLECIEPNCTSREWWPIGHGGVFELGGDKKRK


Parental protein
GQVIQF
GQV.QF
Retrocopy
GQVTQF


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide