RetrogeneDB ID:
retro_ecab_220
Organism:
Horse ( Equus_caballus )
Location:
10:58649189-58649460 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
66.67 %
Coverage:
98.91 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_220
GCTGAACGGATCGAGAAGATCCGAATCGTTGACAAATACAGGACTGGTTACAGTGCCTCT
CTCAGGAAAATGGTGAAGAAAATTGAGCTTGGCCTGCACACCAAGTACACTTGCTCCTTC
TGTGGCAAAACCAAAACGGAGAGATGAGCTGTGGGGCTCTGGCACTGCAATTCTGCGTGA
AACAGCAGCTGGAGGGGCCTGGACCTACCACGCCACTTCTGCCGTCTCAGCAAAGTCAGC
CATCAGAGGACCAAAGGAACCGAAAGAGAAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.04
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
AKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGS-CMK-TVAGGAWTYNTTSAVTVKSAIRRLKELKDQ
A.R..K..IV.KY.T.Y.ASLRKMVKKIE...H.KYTCSFCGKTK..R.AVG.WHC.S.C.K.T.AGGAWTY..TSAV..KSAIR..KE.K..
Retrocopy
AERIEKIRIVDKYRTGYSASLRKMVKKIELGLHTKYTCSFCGKTKTER*AVGLWHCNS/CVK/TAAGGAWTYHATSAVSAKSAIRGPKEPKEK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide