RetrogeneDB ID:
retro_ecab_221
Organism:
Horse ( Equus_caballus )
Location:
10:60270849-60271448 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
61.58 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_221
TTAGAGGACAGAAATATAGTAATGCTTCAGGTTGAGGAGAGAGAACTAAGACTAAAGAGA
AATGAAGAAATTCTCTAAGAAATATCCAACTCAAATAGGAAAAGCAACGTGAGGATTATA
GATATTCCAGAAGGAGAAAGGAGCAGAGAGCTTGTTCAAAGAAATAATACCAAATACCAA
TAATACCAAAAGAACTTCCCAAATCTAGGGAAGGAGCTGAAATTACATGTAAATGAAGCT
AATAAAACTCCTAATTGCATCAATGTAAAAAGACCTTCTCCAGGAATATATTAATAAAAC
TGGCAAAAGTTAATGACAAAGAAAGAGTATTAAGGGCAGCAAGGCAGAAGAAAATAACTT
ACAAAGGAATCCCTATTAGGCTTTCAGTGGATTTCTCAGCAGAAACCTTACAGACTAGGA
GAGAGGGGAATGCTGTATTCAAAATACTGAATGACAAAAACTTTCACCCAAGAATACTCT
ATCCAGTGAAACTATCCTTCAGGTATGATGAAGAAATAAAAACTTTCCCAGGTAAACAAA
AGCTGAGGGAGTTCATCACCAAAAAAAAAACCCTACAAGAAATTGTCAAGAAGGCCCTC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LEDRNTEMLKMEEERELRLKRSEDIFQEIYNPIRKRNIRIISIPTGEERQN--RRESLFKEIITENFLNLGKGLEIQVKEANRTPNYINVERPSP-RHIL
LEDRN..ML..EE.RELRLKR.E.I..EI.N..RK.N.RII.IP.GE.......R..........NF.NLGK.L...V.EAN.TPN.INV.RPSP.R.IL
Retrocopy
LEDRNIVMLQVEE-RELRLKRNEEIL*EISNSNRKSNVRIIDIPEGERSRELVQRXXXXXXXXXKNFPNLGKELKLHVNEANKTPNCINVKRPSP/RNIL


Parental protein
VKLAKLVMKEYIMAEAARQKKITYKGSPIRLSADFS-QTVQTRREWNDIIKILKYKNYPPRILYPVKLSFRYGREIKAFQDKQKLREFITTRPPLQEMMK
.KLAK...KE.....AARQKKITYKG.PIRLS.DFS..T.QTRRE.N...KIL..KN..PRILYPVKLSFRY..EIK.F..KQKLREFIT....LQE..K
Retrocopy
IKLAKVNDKERVL-RAARQKKITYKGIPIRLSVDFSAETLQTRREGNAVFKILNDKNFHPRILYPVKLSFRYDEEIKTFPGKQKLREFITXXXXLQEIVK


Parental protein
TAL
.AL
Retrocopy
KAL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide