RetrogeneDB ID:
retro_ecab_222
Organism:
Horse ( Equus_caballus )
Location:
10:62544922-62545601 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
83.12 %
Coverage:
87.12 %
Frameshifts:
1
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_222
GCACCAACTATGTTCAATATAAGAAATATCAGAAAAACATTAGTCACGAGAACTCAAGGA
ACCAAAATTGCATCTGATGGCCTCAAGGGTCGTGTTTTTGAAATGAACCTTGCTGATCTG
CAGAATGATGAAGTTGCATTTAGAAAATTCAAGCTAATTACAGAGGATGCTCAGGGCAAA
AACTGCCTAACTAACTTCCAAGGCATGGGTCTTACTCGTGACAAAATGTGCTCCAAGGTC
AAAAAATGACAGACCGTGAGTGAAGCTCATGTTGACGTCAAGACTACCAATGGTTATTTG
CTTTGTCTGTTCTGTGCTGGTTTTACTAAAAAATGCAACAATCAGATTCAGAAGACCTCT
TAATGCTCAGCACCAACAGGTCTGCCAAATCCAGCAAAAGATGATGGAAATCATGACCCA
AGAGATACAGACAAATGACTTGAAAGAAGTGGTCAATAAATTGATTCCAGACGGTATTGG
CAAGGACATAGAAAAGGCTTGCCAGCCTATTTATCTGCTCCGTGATGGCTTTGTTAGAAA
AGTGAAAGTGCTGAAGAAGCTCCAGTTTGAATTGGGAAAACTCATGGAGCTTCATGGTGA
AGGTTGCAGTTCTGGAAAAGCTACAGGTGCTAAAGCTGAATGAGCCGATGGATATGAGCC
ATCAGTCCAAGAATCTGTT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.03
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
APAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYL
AP.MFNIRNI.KTLVTRTQGTKIASDGLKGRVFE..LADLQNDEVAFRKFKLITED.QGKNCLTNF.GM.LTRDKMCS.VKK.QT..EAHVDVKTT.GYL
Retrocopy
APTMFNIRNIRKTLVTRTQGTKIASDGLKGRVFEMNLADLQNDEVAFRKFKLITEDAQGKNCLTNFQGMGLTRDKMCSKVKK*QTVSEAHVDVKTTNGYL


Parental protein
LRLFCVGFTKKRNNQIRKTS-YAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHG
L.LFC.GFTKK.NNQI.KTS..AQHQQV.QI..KMMEIMT.E.QTNDLKEVVNKLIPD.IGKDIEKACQ.IY.L.D.FVRKVK.LKK..FELGKLMELHG
Retrocopy
LCLFCAGFTKKCNNQIQKTS\NAQHQQVCQIQQKMMEIMTQEIQTNDLKEVVNKLIPDGIGKDIEKACQPIYLLRDGFVRKVKVLKKLQFELGKLMELHG


Parental protein
EGSSSGKATGDETGAKVERADGYEPPVQESV
EG.SSGKATG....AK.E.ADGYEP.VQESV
Retrocopy
EGCSSGKATG----AKAE*ADGYEPSVQESV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide