RetrogeneDB ID:
retro_ecab_223
Organism:
Horse ( Equus_caballus )
Location:
10:62560328-62561624 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary
Identity:
82.34 %
Coverage:
95.79 %
Frameshifts:
3
Stop codons:
5
Parental gene:
Parental gene symbol:
TUBA1A
Parental gene aliases:
LOC100051840, TUBA1A
Parental gene description:
tubulin, alpha 1a [Source:HGNC Symbol;Acc:20766]
Genomic region (view in browser)
>retro_ecab_223
ATTGGCAATGCCTGCTAGGAGCTCTACTGCCTGGAGCACAGCATCCAGCCCCATGGCCAG
ATGCCAAGTGACAAGACCACTGGGGGAGGAGCTGATTCCTTCCACACCTTCTTCAGTGAG
ACTAGCGCTGGCAAGCATGTGCCTAGGGCAGTGTTTGTGGACCTGGAACCCACAGTCGTC
GATGAAGTTCACACTGGCATCTACCGCCAGCTCTTCCGCCATGAGCAGCTCAATACAGGC
AAGGAAGATGCTGCCAATAACTATGCCCATGGGCGCTACACCATTGACAAGGAGATCAGT
GACCTCATCTGAGACCAAATTTGGAAACTGGCCAACCAGTGCACAGAACTTTAGGGCTTC
TTGGTTTTTCACAGCTTTGGTGGGGGAACTGGTTCTGGGTTCGCCTCTCTGCCGATGGAA
GGTCTCTCTGTCGATTATGGCAGGTAGCTCAAGCTGGAGTTCTCCATTTACCCAGCCCCC
CAGGATTCCACAGCTGTAGTTGAGCCCTACAACTCCATCCTCACCACCCGTACCACCACG
GCGTACTCTGATTGTGCCTTCATGTAGACAATGAGGCCATCTATGACATCTGACATAGAA
ACCTCAATATTGAGTGCCCAATCTATACTAACTTGAATAAGTTGATAGGTCAAATTGTGT
CTTCCATCATTGCTTCCCTCAGATTTGATGAGCCCTGAATGTTGATCTGACAGAATTCCA
GATCAACCTCGTGTGCTCTCCCTGCATCCACTTCCCTCTGGCCACATATGCCCCTGTCAT
CTCTGTTGAGAAAGCCTACCATGAGCAGCTTTCTGTAGCAGAGATCACCAATGCTTGCTT
TGAGCCAGCCAACCAGATGGTGAAATGTGATTCATGCGATGGTAAATACATGGCTTGTTG
CTTGTTGTACTGTGGCAATGTGGTTCCCAAAGATGTCAACACTGCCATTTCCACCATCAA
GACCAAGCGTACCATCTAGTTGTGGATTGGTGCCCCACTGGCTTCAAAGTTGGCATTAAT
TCCCAGCTTCCCACTGTGGTACCTGGTGGAGACCTTGCCAAAGGGCAGCAAGCTGTGTGC
ACACTGAGCAATACCACAGCCACTGCTGAGGCCTGGGCTGGCCTGGACCGCAAGTTTGAC
CTGATGTATGCCAAGCGTGCCTTTGTTCACTGGTATGTGAACATGGAGGGCATGAAGGAA
GGAGAGTTTTCTGAAGCCCATGAGGACACGGCTGCCCTTGAGAAGGGTTATGAGAAGGTT
GGTGTGGATTCTGTTGACAGAGAGGGTGAGGAAGAA
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.0 |
| SRP021940_cerebellum | 0.0 |
| SRP021940_embryo | 0.19 |
| SRP021940_placental_villous | 0.04 |
| SRP021940_synovial_membrane | 0.03 |
| SRP021940_testis | 0.0 |
Parental protein coverage
Changes in the retrocopy sequence
