RetrogeneDB ID:
retro_ecab_225
Organism:
Horse ( Equus_caballus )
Location:
10:1076119-1076641 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary
Identity:
73.3 %
Coverage:
52.25 %
Frameshifts:
2
Stop codons:
2
Parental gene:
Parental gene symbol:
G3PDH
Parental gene aliases:
GAPDH, G3PDH
Parental gene description:
glyceraldehyde-3-phosphate dehydrogenase [Source:RefSeq peptide;Acc:NP_001157328]
Genomic region (view in browser)
>retro_ecab_225
GCTAACGTCATCCTTGACAACTTTGGCATCGTGGAGGGACACATGGCCACAGTCTATGCC
ATCACTGCCACACAGAAGACCATGAACAGTCCCTCTGGGAAGCTGTGGCATGATGCCTGA
GGGGCTGCCCACAACATCATCCCTGCTTCTACTGGTGCTGCCAAGGCTGTGGGCTAGGTC
ATCCCTGAGCTGAATGGAAAGCTTCCTGGCATGGCCTTCTGTGTCCCCAGCCCTGATGAG
TTGGCCATGCATCTGACCTGCCATCTACAAAAAGCTGTAAAATATGATGACATCAAGAAG
GTGGTGAAGTGGGCATCAGAAGGCCTCCTAAAGGGCATCCTGGGCTATGCTGAGGACAGG
TTATCTCCTGTGACTTTAACAGTGACACCCACTCTTCCACCTTCGGTCCTGGGGCTGGCA
TTACCCTCAGCAACCACTTGGTGAAGGTCTTTTCCTGGTATGACAGTGAATTTGACTATA
GCAACGGGGTGGTAGCTGTTAATGGTCCACATGGCCTCCAAG
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.12 |
| SRP021940_cerebellum | 0.15 |
| SRP021940_embryo | 0.12 |
| SRP021940_placental_villous | 0.04 |
| SRP021940_synovial_membrane | 0.08 |
| SRP021940_testis | 0.0 |
Parental protein coverage
Changes in the retrocopy sequence
