RetrogeneDB ID:
retro_ecab_228
Organism:
Horse ( Equus_caballus )
Location:
10:8020861-8021434 (-)
Status:
KNOWN_PSEUDOGENE
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
Alignment summary
Identity:
82.29 %
Coverage:
71.0 %
Frameshifts:
0
Stop codons:
1
Parental gene:
Parental gene symbol:
YBX1
Parental gene aliases:
No gene alias available
Parental gene description:
Y box binding protein 1 [Source:HGNC Symbol;Acc:8014]
Genomic region (view in browser)
>retro_ecab_228
ACGAAGGTTTTGGTAACAGTAAAATGGTTCAAGGTAAGAAACGGATCTGGTTTCATCAAC
AGGAATGACACCAAGGAAGACGTATTTGTGTACCAGACTGCCATGAAGAAGAATCATCCC
AGGAAGTACCTTCACAGTGTAGGAGACAGAGAGACTGTGGAGTTTGATGTTGGTGAAGGA
GAAAAGGGTGCGGAGGCAGCAAATGTTACAGGTCCTGGTGGAGTTCCAGTGCAAGGAAGT
AAATACACAGCAGACTGTAACCATTACAGATGCTATCCACGCGGCAGGGATCCTCCACGC
AACTGCCAGCAGAATTACCAGAAGAGTGAGAGTGGAGAAAAGAACGAGGGATCGGAGAGT
GCTCTCAAAGGTCAGGCCCAACAGCGCCGGCCCTACCACAGGCGACAACGGCTCCCATCT
TACTACATGCGGAGTCCCTGTGGGCGTCAACCACAGTATTCCAATCCTCCTGTGCAAGAA
GTGATGGAGGGTGCTGACAACCAGAGTGCAGGAGAACAAGGCAGACCAGTGAGGTAGAAT
AGGTATTGGGGTTATACACTAGGATTCTGCAGG
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 1.39 |
| SRP021940_cerebellum | 0.2 |
| SRP021940_embryo | 0.31 |
| SRP021940_placental_villous | 0.04 |
| SRP021940_synovial_membrane | 1.28 |
| SRP021940_testis | 0.24 |
Parental protein coverage
Changes in the retrocopy sequence
