RetrogeneDB ID:
retro_ecab_229
Organism:
Horse ( Equus_caballus )
Location:
10:10575519-10576010 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
70.06 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
TXN2
Parental gene aliases:
No gene alias available
Parental gene description:
thioredoxin 2 [Source:HGNC Symbol;Acc:17772]

Genomic region (view in browser)





>retro_ecab_229
ATGGCTCAGCAACTTCTGCTGAGGAGGTGCCTGGCCTCTGTCACCTCCAGGAAGCCCCTC
AGAGTCAGTGGGCACCCCTCACCTCCAGGGCCCAGCAGACTGCACAGTGCAGTCCTCATG
GCTTGATAGTAACCCTGGCTCCAGCCTGGTTAATATACACCACCAGAGTCTCTACAATGA
CCTTTAACGTCCAGAGTGGACCTGAGTTTCAAGACCGAGTTATCAACAGTGAGTCACCAG
TGGTGGCAGATTTCCATGCACAGTGGTGGGGCCCCTGCAGGATCCTGGGACCGAGGTTAG
AGAAGATGGTGGCCAAGCAGCACGGAAAGGTGGTGATGGCCAAGGTGGATACTGATGGCC
ACACAGACTTCGCTATGGAATATGAAGTGTTGGCTCTTCCCACTGTGCCAGCCATCAAGA
ATGGGGACGTGGTGGACAAGTTTGTGGGCTTCAAGGACCAGCTGGAGGCCTCCCTGAAGA
AGCCGATTGGC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAQRLLLRRFLASVVSRRPC-PGRWGPLTSRALPAPQCGPGDLTGTPSQARSLYTTRVCATTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPR
MAQ.LLLRR.LASV.SR.P.....W.PLTSRA....QC.P..L..T...A...YTTRV...TFN.Q.GP.FQDRV.NSE.PVV.DFHAQW.GPC.ILGPR
Retrocopy
MAQQLLLRRCLASVTSRKPL/QSQWAPLTSRAQQTAQCSPHGLIVTLAPAWLIYTTRVSTMTFNVQSGPEFQDRVINSESPVVADFHAQWWGPCRILGPR


Parental protein
LEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLRKLIG
LEKMVAKQHGKVVMAKVD.D.HTD.A.EYEV.A.PTV.A.KNGDVVDKFVG.K..DQLEA.L.K.IG
Retrocopy
LEKMVAKQHGKVVMAKVDTDGHTDFAMEYEVLALPTVPAIKNGDVVDKFVGFK--DQLEASLKKPIG


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide