RetrogeneDB ID:
retro_ecab_23
Organism:
Horse ( Equus_caballus )
Location:
X:21091686-21093912 (-)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
64.58 %
Coverage:
90.91 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
SMEK2
Parental gene aliases:
No gene alias available
Parental gene description:
SMEK homolog 2, suppressor of mek1 (Dictyostelium) [Source:HGNC Symbol;Acc:29267]

Genomic region (view in browser)





>retro_ecab_23
ATGGAAGACAAAGGGCACCTTGTAAAGGTCTATATGCTTAATGAAGACCAAGAGTGGGAC
AATATAGGCATCGGCTACGTCTCATTCACTTATGTGGAGCAGTTCGAGGGCGTGGCCATG
CTGGTTCGATCTGAGTCGGACGACTCCGTGATCTTGGAGACAAAGATAAATACAAACGAG
CCCTATCAGAAACAGCAAGGGACTTTAATTGTCTGGACTCATTCTGACAACCGTGATGTG
GCGTTAAGTTTCCAGGACGAAGGAAGTTGCCACGAGATCTGGGAAGCCATTTGCCGGCTT
CAAGGAAACCCGACCATCGAAATCACACAGGACCTGTTGGAAGAAGCCGGAGAGGAACCA
CCCGACGAAATGCTAGATCCCGGGAGTCTCATCGACCTGCCGAACTGTGAGCTCAATACG
CTTGAACAGATTTCTGCCTTAGTTACCTCGGTTCTCACCTCGCCTAGACGTGAGGAAAGT
CTGGCTGTGCTCTTGGAAAATGAGGACTATATTAAAAAGCTACTGCAGCTGTTCCACATT
TGTGAGAACCTGCGGGATATGGAAGGCTTGCACTATTTGCATAAAATTATTAAAGGAATC
TTATTCCTCAACAAGACCTCTCTGCTTGAGGTCCTTTTTTCGGAAGAGTGTATCATGGAT
GTGGTGGGATGCCTTGAATACGATCCTGCTTTGGCTCAGCCGCAAAGGCATCGGGAATTC
CTGACCCAACATGCAAAGTTCAAGGAAGTTGTACCAATAACTGACTCTGAACTTAGGCAA
AAAATACATCAGACGTACAGGGCACAGTACATTTACGACATCGTTTTGCCTGTGCCATCC
CCGTTTGAAGAGAATGTTCTTTCCACTGTTATTGCTTTTATTTTCTTCAACAAGGTTGAG
ATAGTCAGCATGCTGCAGGAAGATGACAAATTTTTGTCTGACGTTTTTGCACAGCTAAGA
GATAAGACTATCAGTGATGACAGACGGCGCGAATTGGTATTCTTTTTCAAGGAATTCTGT
GAATTTTCTCAGAGTTTACAGCCTGAAAGCAAGGATGCACTATTCACGACACTGACAGAA
TTGGGAATTCTTCCTGCTCTTAAAATTGTAATGAGCGTGGATGATTTGCAAATAAGGTCA
GCTGCTACTGATATATTCACTTATCTGTTGGAGCACAGTCCATCCATGATCCAAGAATTT
ATAATGGAGGAAGCCCAGCAGAGTGAAGATGGTAACCTTTTCATCAATTTAGTAATTGGA
CAAATGGTCTCTGATCCTGATCCTGAGCTAGGAGGTGCTGTTCGTTCAGTGGAACTTCTT
CGTGCTCTGCTTAATCCAGACAACATGCTGGGGACACCTGGTAAATGTGAAAGAAGTGAA
TTTCTAAATTTCTTCTATAAACACTGTATGCATAACTTCATAGCACCACTTTTGGCCGCC
ACTTCAGAAGAGATTTGTGAAGAAAAGAATATAGCTGGATCTGACAAAAGCAACAAATAT
TGCTTCAATAATTATCAAACAGCACAGCTGCTTTCCTTAATTTTAGAGCTGCTCACATTT
TGTGTGCAACATCACACATATCACATTAAAAGCTATATTTTCAGCAAGGACTTGCTAAGA
AGAGTCTTGATCTTGATGAATTCAAAGCACACTTTCCTGGTCTTGTCTGCTGTTCGCTTT
ATGAGAAGCATGGTTGGCCTCCAAGATGAATTTTATAATGATTACATCATCAAGGGAAAT
TTATTTCAGCCGGTTGTAAATGTCTTTCTGGATAATGGAAATCGGTACAATATGTTGAAT
TCAGCAGTTATTGAACTGTTCGAATACATAAGAGAGGAAAATATCAAGCCTCTTGTTGCA
CATATAGTTGAAAAGTTTTACAAGGCATTTGAATCGATTGAATATGTTCAGACATTCAAA
GGATTGAAGATTAACTATGAAAAAGAGAAAGACCAGCAGAGTCAAATACAGAAGAATTTA
CTTTCCACGCTGTTTCATAAAGTGTTTCACAGCAGTAGCAAAGTCCTGGAGGAGAAGGAA
GAAATGTGTTTTAAAGAAAGTAAAGAGGAAGAAGAAGCAGTTAGGCCACCGTTGGAAGAT
GATTTTGAAGATCCTTCTGATAAGTTTGTGGAGACGACAAACCCAAAAGAAAATGAAGAC
AAGGTAGATCTTCCGAAAAGAACGTCTTCTGGCAACTTCAAGTTTACTTCATCCCATTCT
GCGAGT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.09
SRP021940_synovial_membrane 0.03
SRP021940_testis 2.2

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MSDTRRRVKVYTLNEDRQWDDRGTGHVSSTYVEELKGMSLLVRAESDGSLLLESKINPNTAYQKQQASDTLIVWSEAENYDLALSFQEKAGCDEIWEKIC
M.D....VKVY.LNED..WD..G.G.VS.TYVE...G...LVR.ESD.S..LE.KIN.N..YQKQQ...TLIVW....N.D.ALSFQ....C.EIWE.IC
Retrocopy
MEDKGHLVKVYMLNEDQEWDNIGIGYVSFTYVEQFEGVAMLVRSESDDSVILETKINTNEPYQKQQG--TLIVWTHSDNRDVALSFQDEGSCHEIWEAIC


Parental protein
QVQGKDPSVEVTQDLIDESEEERFEEMPETSHLIDLPTCELNKLEEIADLVTSVLSSPIRREKLALALENEGYIKKLLQLFQACENLENTEGLHHLYEII
..QG..P..E.TQDL..E..EE...EM.....LIDLP.CELN.LE.I..LVTSVL.SP.R.E.LA..LENE.YIKKLLQLF..CENL...EGLH.L..II
Retrocopy
RLQG-NPTIEITQDLLEEAGEEPPDEMLDPGSLIDLPNCELNTLEQISALVTSVLTSPRREESLAVLLENEDYIKKLLQLFHICENLRDMEGLHYLHKII


Parental protein
RGILFLNKATLFEVMFSDECIMDVVGCLEYDPALAQPKRHREFLTKTAKFKEVIPITDSELRQKIHQTYRVQYIQDIILPTPSVFEENFLSTLTSFIFFN
.GILFLNK..L.EV.FS.ECIMDVVGCLEYDPALAQP.RHREFLT..AKFKEV.PITDSELRQKIHQTYR.QYI.DI.LP.PS.FEEN.LST...FIFFN
Retrocopy
KGILFLNKTSLLEVLFSEECIMDVVGCLEYDPALAQPQRHREFLTQHAKFKEVVPITDSELRQKIHQTYRAQYIYDIVLPVPSPFEENVLSTVIAFIFFN


Parental protein
KVEIVSMLQEDEKFLSEVFAQLTDEATDDDKRRELVNFFKEFCAFSQTLQPQNRDAFFKTLAKLGILPALEIVMGMDDLQVRSAATDIFSYLVEFSPSMV
KVEIVSMLQED.KFLS.VFAQL.D....DD.RRELV.FFKEFC.FSQ.LQP...DA.F.TL..LGILPAL.IVM..DDLQ.RSAATDIF.YL.E.SPSM.
Retrocopy
KVEIVSMLQEDDKFLSDVFAQLRDKTISDDRRRELVFFFKEFCEFSQSLQPESKDALFTTLTELGILPALKIVMSVDDLQIRSAATDIFTYLLEHSPSMI


Parental protein
REFVMQEAQQSDDDILLINVVIEQMICDTDPELGGAVQLMGLLRTLIDPENMLATTNKTEKSEFLNFFYNHCMHVLTAPLLTNTSEDRCEKDNIVGSNKN
.EF.M.EAQQS.D..L.IN.VI.QM..D.DPELGGAV....LLR.L..P.NML.T..K.E.SEFLNFFY.HCMH...APLL..TSE..CE..NI.GS.K.
Retrocopy
QEFIMEEAQQSEDGNLFINLVIGQMVSDPDPELGGAVRSVELLRALLNPDNMLGTPGKCERSEFLNFFYKHCMHNFIAPLLAATSEEICEEKNIAGSDKS


Parental protein
STICPGKYGSVQILAVLLALLTFCVEHHTYTIK-YIMNKDLLRRVLDLMNSKHTFLALCALRFMRRIIGLKDEFYNRYITKGNLFEPVINALLDNGTRYN
...C...Y...Q.L...L.LLTFCV.HHTY.IK.YI..KDLLRRVL.LMNSKHTFL.L.A.RFMR...GL.DEFYN.YI.KGNLF.PV.N..LDNG.RYN
Retrocopy
NKYCFNNYQTAQLLSLILELLTFCVQHHTYHIKSYIFSKDLLRRVLILMNSKHTFLVLSAVRFMRSMVGLQDEFYNDYIIKGNLFQPVVNVFLDNGNRYN


Parental protein
LLNSAVVELFEFIRVEDIKSLTAHIVENFYKALESIEYVQTFKGLKTKYEQEKDRQNQKLNSVPSILRSNRFRRDAKALEEDEEMWFNEDEEEEGKAVVA
.LNSAV.ELFE.IR.E.IK.L.AHIVE.FYKA.ESIEYVQTFKGLK..YE.EKD.Q.Q......S.L....F....K.LEE.EEM.F.E..EEE..AV..
Retrocopy
MLNSAVIELFEYIREENIKPLVAHIVEKFYKAFESIEYVQTFKGLKINYEKEKDQQSQIQKNLLSTLFHKVFHSSSKVLEEKEEMCFKESKEEE-EAVRP


Parental protein
PVEKSKSEDDFPDSYEKFMETKKAKESEDKENLPKRTSSGSFKFTFSHSTS
P.E......D..D........K......D...LPKRTSSG.FKFT.SHS.S
Retrocopy
PLE--DDFEDPSDKFVETTNPKENEDKVD---LPKRTSSGNFKFTSSHSAS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide