RetrogeneDB ID:
retro_ecab_23
Organism:
Horse ( Equus_caballus )
Location:
X:21091686-21093912 (-)
Status:
KNOWN_PROTEIN_CODING
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary
Identity:
64.58 %
Coverage:
90.91 %
Frameshifts:
0
Stop codons:
0
Parental gene:
Parental gene symbol:
SMEK2
Parental gene aliases:
No gene alias available
Parental gene description:
SMEK homolog 2, suppressor of mek1 (Dictyostelium) [Source:HGNC Symbol;Acc:29267]
Genomic region (view in browser)
>retro_ecab_23
ATGGAAGACAAAGGGCACCTTGTAAAGGTCTATATGCTTAATGAAGACCAAGAGTGGGAC
AATATAGGCATCGGCTACGTCTCATTCACTTATGTGGAGCAGTTCGAGGGCGTGGCCATG
CTGGTTCGATCTGAGTCGGACGACTCCGTGATCTTGGAGACAAAGATAAATACAAACGAG
CCCTATCAGAAACAGCAAGGGACTTTAATTGTCTGGACTCATTCTGACAACCGTGATGTG
GCGTTAAGTTTCCAGGACGAAGGAAGTTGCCACGAGATCTGGGAAGCCATTTGCCGGCTT
CAAGGAAACCCGACCATCGAAATCACACAGGACCTGTTGGAAGAAGCCGGAGAGGAACCA
CCCGACGAAATGCTAGATCCCGGGAGTCTCATCGACCTGCCGAACTGTGAGCTCAATACG
CTTGAACAGATTTCTGCCTTAGTTACCTCGGTTCTCACCTCGCCTAGACGTGAGGAAAGT
CTGGCTGTGCTCTTGGAAAATGAGGACTATATTAAAAAGCTACTGCAGCTGTTCCACATT
TGTGAGAACCTGCGGGATATGGAAGGCTTGCACTATTTGCATAAAATTATTAAAGGAATC
TTATTCCTCAACAAGACCTCTCTGCTTGAGGTCCTTTTTTCGGAAGAGTGTATCATGGAT
GTGGTGGGATGCCTTGAATACGATCCTGCTTTGGCTCAGCCGCAAAGGCATCGGGAATTC
CTGACCCAACATGCAAAGTTCAAGGAAGTTGTACCAATAACTGACTCTGAACTTAGGCAA
AAAATACATCAGACGTACAGGGCACAGTACATTTACGACATCGTTTTGCCTGTGCCATCC
CCGTTTGAAGAGAATGTTCTTTCCACTGTTATTGCTTTTATTTTCTTCAACAAGGTTGAG
ATAGTCAGCATGCTGCAGGAAGATGACAAATTTTTGTCTGACGTTTTTGCACAGCTAAGA
GATAAGACTATCAGTGATGACAGACGGCGCGAATTGGTATTCTTTTTCAAGGAATTCTGT
GAATTTTCTCAGAGTTTACAGCCTGAAAGCAAGGATGCACTATTCACGACACTGACAGAA
TTGGGAATTCTTCCTGCTCTTAAAATTGTAATGAGCGTGGATGATTTGCAAATAAGGTCA
GCTGCTACTGATATATTCACTTATCTGTTGGAGCACAGTCCATCCATGATCCAAGAATTT
ATAATGGAGGAAGCCCAGCAGAGTGAAGATGGTAACCTTTTCATCAATTTAGTAATTGGA
CAAATGGTCTCTGATCCTGATCCTGAGCTAGGAGGTGCTGTTCGTTCAGTGGAACTTCTT
CGTGCTCTGCTTAATCCAGACAACATGCTGGGGACACCTGGTAAATGTGAAAGAAGTGAA
TTTCTAAATTTCTTCTATAAACACTGTATGCATAACTTCATAGCACCACTTTTGGCCGCC
ACTTCAGAAGAGATTTGTGAAGAAAAGAATATAGCTGGATCTGACAAAAGCAACAAATAT
TGCTTCAATAATTATCAAACAGCACAGCTGCTTTCCTTAATTTTAGAGCTGCTCACATTT
TGTGTGCAACATCACACATATCACATTAAAAGCTATATTTTCAGCAAGGACTTGCTAAGA
AGAGTCTTGATCTTGATGAATTCAAAGCACACTTTCCTGGTCTTGTCTGCTGTTCGCTTT
ATGAGAAGCATGGTTGGCCTCCAAGATGAATTTTATAATGATTACATCATCAAGGGAAAT
TTATTTCAGCCGGTTGTAAATGTCTTTCTGGATAATGGAAATCGGTACAATATGTTGAAT
TCAGCAGTTATTGAACTGTTCGAATACATAAGAGAGGAAAATATCAAGCCTCTTGTTGCA
CATATAGTTGAAAAGTTTTACAAGGCATTTGAATCGATTGAATATGTTCAGACATTCAAA
GGATTGAAGATTAACTATGAAAAAGAGAAAGACCAGCAGAGTCAAATACAGAAGAATTTA
CTTTCCACGCTGTTTCATAAAGTGTTTCACAGCAGTAGCAAAGTCCTGGAGGAGAAGGAA
GAAATGTGTTTTAAAGAAAGTAAAGAGGAAGAAGAAGCAGTTAGGCCACCGTTGGAAGAT
GATTTTGAAGATCCTTCTGATAAGTTTGTGGAGACGACAAACCCAAAAGAAAATGAAGAC
AAGGTAGATCTTCCGAAAAGAACGTCTTCTGGCAACTTCAAGTTTACTTCATCCCATTCT
GCGAGT
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.0 |
| SRP021940_cerebellum | 0.0 |
| SRP021940_embryo | 0.02 |
| SRP021940_placental_villous | 0.09 |
| SRP021940_synovial_membrane | 0.03 |
| SRP021940_testis | 2.2 |
Parental protein coverage
Changes in the retrocopy sequence
