RetrogeneDB ID:
retro_ecab_236
Organism:
Horse ( Equus_caballus )
Location:
10:28617296-28617464 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
71.43 %
Coverage:
54.9 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_236
ATGAGTAACAGCACAGTTCCCAGTGCCCTCCGGGTCAACAGAGACTCCACGGTGGGCTAC
ATGCTGGGGCCTTTCTTCCTCATCCCCTCGGTCGGGCTGGTTGCGGCTGTGGCAATGTAT
GTCCAGAAGAAAAAGGGGGTGGACGGGCTTCGCCATCACCTGCTCCCC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.06
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.05
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MRNTTVPNAPQANSDSMVGYVLGPFFLITLVGVVVAVVMYVQKKKRVDRLRHHLLP
M.N.TVP.A...N.DS.VGY.LGPFFLI..VG.V.AV.MYVQKKK.VD.LRHHLLP
Retrocopy
MSNSTVPSALRVNRDSTVGYMLGPFFLIPSVGLVAAVAMYVQKKKGVDGLRHHLLP


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide