RetrogeneDB ID:
retro_ecab_237
Organism:
Horse ( Equus_caballus )
Location:
10:34702976-34703478 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
57.31 %
Coverage:
68.46 %
Frameshifts:
2
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_237
AGAAAAAAGAATAGTCTAAGGGACCACTGGGACAACAAGTGCATTAACATTCATATTATA
GGTTTCCCAGAAGGAGAAGAAAGAGACAAAGGGGCAAAGAATCTATTTGAAGGAATAATA
GCTGAAAACTTTCCTAACCTAAGGAAGGAAACAGACATCAAGGTACAGGAAGCACAGAGA
ACACCAAACAAGATAAACCCAAAGAGGCTCAAACCAAGACACATTATAAATAAAATGTCA
AGAATTAAAGAAAAAGAGAGAATCCTAAAAGCCATAATGGGCAACAAGTTACATACAAAG
GAAATCCCATAAGGCTATCAGCTGACTTCTCAGCAGAAACCTTATAAGCTAGAAGGGAGT
AGCATGATATATTTAAAGTGCACAAAGGAAAGAACCTACAGCCAAGGATACCCTACTGCC
AAGTTTACCATTTGGAATGGAAGGAGAGACAAAGAGTTTCTTAGACAAGCAAAAAGTAAA
GGAGTTTATCACCAAGAAACCA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
QNENSLRELWDNIKCTNIRFIGVPEGEERDKEA----ENRVAENFPNLKKETDIHIQEAQRTPKKISPKRATPRHIIIKISKMNDKERI-PRAARQKKIS
...NSLR..WDN.KC.NI..IG.PEGEERDK.A....E...AENFPNL.KETDI..QEAQRTP.KI.PKR..PRHII.K.S....KERI.P.........
Retrocopy
RKKNSLRDHWDN-KCINIHIIGFPEGEERDKGAKNLFEGIIAENFPNLRKETDIKVQEAQRTPNKINPKRLKPRHIINKMSRIKEKERI/PKSHNGQQVT


Parental protein
YKGTPIRLSVHFSTETLQARRDWNDIFKTLKDKNLQPRILYPAKIFFRYE-GEIKSFPDNQKLRDFVATSP
YKG.PIRLS..FS.ETL.ARR...DIFK..K.KNLQPRI.Y..........GE.KSF.D.QK...F....P
Retrocopy
YKGNPIRLSADFSAETL*ARRE*HDIFKVHKGKNLQPRIPYCQVYHLEWK/GETKSFLDKQKVKEFITKKP


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide