RetrogeneDB ID:
retro_ecab_238
Organism:
Horse ( Equus_caballus )
Location:
10:37196844-37197322 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
78.53 %
Coverage:
93.6 %
Frameshifts:
2
Stop codons:
0


Parental gene:
Parental gene symbol:
LYPLA1
Parental gene aliases:
No gene alias available
Parental gene description:
lysophospholipase I [Source:HGNC Symbol;Acc:6737]

Genomic region (view in browser)





>retro_ecab_238
ATGGCTGTTACATTAAATGTAACATGGCTATGCCTTCTTGGTTTGGTATTATTGTGTACT
TACCAGATTTACAGGAGGATGAACCTGGAATTAAACAGAGGGCAGAAAACGTTAAAGCTC
TGATAAAGCAGGAGTGAAGAAAGGTATTTCTTCAAACAGAATTAGCTGGGAGGATTTTTC
TCAGGGAGGAGCACTATCTCTATACACTGCTCTTACCACACAGCAGAAACCGGCAGGCAT
CACTGCACTCAGCTGCGGGCTTCCACGGAGATGGGTTCCCCAGGGTCCTATCAGTGGCGT
TAATAGAGATGTTTCTATTCTCCAGTGCCATGGAGATTGCGACCCTTTAGTTCCCCGAAT
GGTTGGTTCTCTCACTGTTGAAAAGCTAAAAACATTGGTAAATCCAGCCAATGTAACCTT
CAAAACCTATGAAGGCATGATGCACAGTTCACGTCACCAGGAACTGATAAATGATAAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.06
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MPVTLNM-NMAMPSWFDIVGLSPDSQEDEPGIKQAAENVKALIEQE-VKNGIPSHRIILGGFSQGGALSLYTALTTQQKLAGVTALSCWLPLRASFPQGP
M.VTLN..NMAMPSWF.I....PD.QEDEPGIKQ.AENVKALI.QE.VK.GI.S.RI....FSQGGALSLYTALTTQQK.AG.TALSC.LP.R...PQGP
Retrocopy
MAVTLNV/NMAMPSWFGIIVYLPDLQEDEPGIKQRAENVKALIKQE/VKKGISSNRISWEDFSQGGALSLYTALTTQQKPAGITALSCGLP-RRWVPQGP


Parental protein
ISGVNRDISILQCHGDCDPLVPLMFGSLTVEKLKTLVNPANVTFKTYEGMMHSSCQQEMMDIK
ISGVNRD.SILQCHGDCDPLVP.M.GSLTVEKLKTLVNPANVTFKTYEGMMHSS..QE....K
Retrocopy
ISGVNRDVSILQCHGDCDPLVPRMVGSLTVEKLKTLVNPANVTFKTYEGMMHSSRHQELINDK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide