RetrogeneDB ID:
retro_ecab_239
Organism:
Horse ( Equus_caballus )
Location:
10:41594730-41594996 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
51.04 %
Coverage:
72.52 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
RPS24
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S24 [Source:HGNC Symbol;Acc:10411]

Genomic region (view in browser)





>retro_ecab_239
AGGAAATTCATGACCAATGAGTGCTTTGATAGGAAGAGTAGATCAAAGATATCCTTTACC
CTGGAAAAGCAACATTATTCATGACTGAAATACTAGCCAAATTGTCCAAGACTATACTGG
ATATTATTTTGGACTTCCGATTCAGAACTCTTTTTGATAAGACAACAGAATTTGATATGG
TTTATGTTCTTTTAATTAGGATAAAATAAAATCCCCAACAGAGACTTGCAAAGCATGGCC
TAAGTAAGAAGAAAAATATTTTGAGA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.06
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.04
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RKFMTNRLLQRKQM-VIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSR
RKFMTN....RK.....D.L.PGKAT...TEI...LAK..KT..D.I..F.FRT.F...KTT.F.M.Y..L...K.N.P..RLA.HGL..KK...R
Retrocopy
RKFMTNECFDRKSR/IKDILYPGKATLFMTEI---LAKLSKTILDIILDFRFRTLF--DKTTEFDMVYVLLIRIK*N-PQQRLAKHGLSKKKNILR


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide