RetrogeneDB ID:
retro_ecab_24
Organism:
Horse ( Equus_caballus )
Location:
3:56561207-56561690 (-)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
98.12 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
RPL21
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L21 [Source:HGNC Symbol;Acc:10313]

Genomic region (view in browser)





>retro_ecab_24
ATGACCAACACAAAGGGAAAGAGGAAAGGCACCCGCTATATGTTCTCTAGGCCATTTAGA
AAACATGGAGTTGTTCCTTTGGCCACATACATGCGAATCTACAAGAAAGGTGATATTGTA
GACATCAAGGGAATGGGCACTGTTCAAAAAGGAATGCCCCACAAATGTTACCATGGCAAA
ACTGGAAGAGTCTACAATGTTACCCAGCATGCTGTTGGCATTGTTGTAAACAAACAAGTA
AAGGGCAAGATTCTTGCCAAAAGAATTAATGTACGTATTGAGCATATTAAGCATTCTAAG
AGCCGGGATAGCTTCCTGAAACGTGTGAAGGAAAATGATCAGAAAAAGAAGGAAGCCAAA
GAGAAGGGTACTTGGGTTCAACTGAAGCGCCAGTCTGCTCCACCCAGAGAAGCACACTTT
GTGAGAACCAATGGAAAGAAGCCTGAGCTGCTGGAACCCATTCCCTATGAATTCATGGCA
TGA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.17
SRP021940_cerebellum 0.05
SRP021940_embryo 0.12
SRP021940_placental_villous 0.09
SRP021940_synovial_membrane 0.16
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSK
MTNTKGKR.GTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSK
Retrocopy
MTNTKGKRKGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSK


Parental protein
SRDSFLKRVKENDQKKKEAKEKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYEFMA
SRDSFLKRVKENDQKKKEAKEKGTWVQLKRQ.APPREAHFVRTNGK.PELLEPIPYEFMA
Retrocopy
SRDSFLKRVKENDQKKKEAKEKGTWVQLKRQSAPPREAHFVRTNGKKPELLEPIPYEFMA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide