RetrogeneDB ID:
retro_ecab_240
Organism:
Horse ( Equus_caballus )
Location:
10:47119603-47120471 (-)
Status:
KNOWN_PSEUDOGENE
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary
Identity:
87.41 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
1
Parental gene:
Parental gene symbol:
LRRC59
Parental gene aliases:
No gene alias available
Parental gene description:
leucine rich repeat containing 59 [Source:HGNC Symbol;Acc:28817]
Genomic region (view in browser)
>retro_ecab_240
AAGCTGGACGGCAACGACCTGGACCTGAGCCTCAGCGACCCGAATGAGGTCCCCGTCAAG
GAGCTTGCCGCCTTCCCAAAGGCCACCCTACTGGATCTGTCCTGCAATAAAGTGATTACT
CTACCGTCGGATTTCTGTGGCCTCAGGCACCTTGTGAAGCTGGACCTCAGTAAGAACAAA
CTGCAGCAACTGTGGGCCGACTTCGGCCGTCTGGTCAACCTCCAGCACCTGGCTCTCCTC
AACAGGCTGCTCACCCTGTCTGTCAGATTTGCTCAGCTCAAGAGCCTGAAGTTGGCTGGA
CCTGAAGGATAACCCCCTGGATCCTGTCCTGGCCAAAGTGGCAGACGATTGCTTGGATGA
GAAGCAGTGTAAGCAGTGTGCCAGCAAGGCGTGACAGCACATGAAGGCCTTGCAGGCGAA
TCAGGGGCGAGAGAGGCTGCGGCGACTAGAAGTAGAACGAGAGAATGAGAGGAAGCGGGA
GGCCAGGCAGGGAGCTAAGGAAGCTCAGGAGCGGGAACTAGGGAAGCGGGAGAAGGCAGA
AGAGAAGGAGCACCGGAGAAAAGAGTATGATGCCTTCAAGGCAGCCAAGAGGGAGCGGGA
GAAGAAACCTAAGAAGGAAACAAATCAGGCCACGAAATCTAAGTCTGGCTCTCGCCCGCG
GAAGCCACCACCCCGGAAACACACCCGGTCCTGGGCTGTGCTGAAGCTGCTGCTGCTGTG
CGTGGCCGGTGGGCTGGTTGCTTGTCGGGTGACAGAGCTGCAGCAGCAGCCCCTCTGCAC
CAGCGTGAACACCATCTACGACAGTGCGGTCCGGGGTCTGCGCAGCCAAGACATCCTCCA
GTGGGTCCTGCAGACCGATTCTCAGCAG
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.75 |
| SRP021940_cerebellum | 0.65 |
| SRP021940_embryo | 1.05 |
| SRP021940_placental_villous | 0.58 |
| SRP021940_synovial_membrane | 0.76 |
| SRP021940_testis | 1.31 |
Parental protein coverage
Changes in the retrocopy sequence
