RetrogeneDB ID:
retro_ecab_241
Organism:
Horse ( Equus_caballus )
Location:
10:51968910-51969754 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
67.61 %
Coverage:
100.0 %
Frameshifts:
3
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_241
ATGAGGAGACAAAGGAATATGTTCCAAGTAAGGGAACAGGACAAATCCTCAGAAAAGGAA
CTAAATGAAACAGAGATAAACAACCTACCTGATAAAGAGTACAAACGAATAGTCATAAAG
ATGCTAACTGATCTTTGGAGAAGAATAGATGAATACAGTGAGAACTGCAACAAAGAATTT
GAAAATATAAAAAAAGAACCCATCAGAATTGAAGAATACAATAATGGAAATGAAAAATTC
ACCAGAGGGAATCAATAGCAGAATAGATGACACAGAAGAATGGATCAGCAAGCTGGACAA
AAAACTAGAGGAACTCACCCAAGCTGAACAGAAAAAAAGGAAAAAGAATTAAAAAGAATG
AGGACAGTTTAAGGGACCTCTGGGACAACATCAAGAGCACTAACACCTGTATTACAAGTG
CCCCAGAAGGAGAAGAGAGAGACAAAGGGGCAGAGAATCTGTTCAAAGAAATAAAGCTGA
AAACTTTCCTAATCTAAAGAAGGAAACAGACATCCAGGTACAGGAAGCACAGAGAGCACC
AAACAAGATGAACCCAAAGAGGGCTCCACCAAGACACATTATAATTAAAATGTCAAGAAT
TGGAGATAAAGAGAGAATCCTAAAGGCTATAAGAGAAAGGCAACAAGTGACACACAAAGG
AAACCCCATAAGGGTATCAGCTGATTTCTCAGCAGAAACTTTACAGGTTACAAGGGAGTG
GCATAATATATTTAAAGTGCTAAAAGGAAAAAACCTATAGCCAAGAATATCCTACACAGC
AAAGTTATCTTTCAGAATGGAAGGAAGGATAAAGAGTTTTCCAGACAAGCAAAAACTAAA
GGAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MRRQRNMFHARVQDKTPEKELNETQRDNLPDKEFKQKGIRMLIDLGRRMDKHSENVNKELENIKK-SQSEMKSTILKMKNSLEGLNSRVDDTEEWIKKLD
MRRQRNMF..R.QDK..EKELNET...NLPDKE.K...I.ML.DL.RR.D..SEN.NKE.ENIKK...SE.K.TI..MKNS.EG.NSR.DDTEEWI.KLD
Retrocopy
MRRQRNMFQVREQDKSSEKELNETEINNLPDKEYKRIVIKMLTDLWRRIDEYSENCNKEFENIKK\NPSELKNTIMEMKNSPEGINSRIDDTEEWISKLD


Parental protein
EKLEEISQ-VNQVKEKTILKNDSKIKELWDNIKHANIRIISVPGGEERHKGEENLFEEII-DENFPNLRKETDIQVQEEQRAPNKSSPKRPTPIHIIIKM
.KLEE..Q..N................LWDNIK..N..I.S.P.GEER.KG.ENLF.EI...ENFPNL.KETDIQVQE.QRAPNK..PKR..P.HIIIKM
Retrocopy
KKLEELTQ\LNXXXXXXXXXXEDSLRDLWDNIKSTNTCITSAPEGEERDKGAENLFKEIK/AENFPNLKKETDIQVQEAQRAPNKMNPKRAPPRHIIIKM


Parental protein
SKIKDKERILKAARERPEVTYKGKPIRLSADFSAETLQATREWHDIFKVLKGKNLQPRIFYPSRSSFRMEGEIKRFPDKQNVKE
S.I.DKERILKA.RER..VT.KG.PIR.SADFSAETLQ.TREWH.IFKVLKGKNL.PRI.Y....SFRMEG.IK.FPDKQ..KE
Retrocopy
SRIGDKERILKAIRERQQVTHKGNPIRVSADFSAETLQVTREWHNIFKVLKGKNL*PRISYTAKLSFRMEGRIKSFPDKQKLKE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide