RetrogeneDB ID:
retro_ecab_243
Organism:
Horse ( Equus_caballus )
Location:
10:53847962-53848537 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
60.8 %
Coverage:
98.49 %
Frameshifts:
3
Stop codons:
3


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_243
CTCAAAGACAGGAACATGCTTCATGTGGAGAAGGAGAGAAAACTAAGATTCAAAAAAAAT
GAAGAAATTCTTCAAGAAATATCTGACTCAATTAGGAAAAGTAACATAAGTGTTATAGAT
ATCCCAGAAGGACAAGATGAAGAAAGGAGGAGAGAGCTTGTTCAAGGAAATAATGGCTTA
GAACTTCCCAAACCTGGGGAAAAAACTAGACATACAAGTACGTGAAGCCAATAGCACTCC
TAATTACTTCAATACAAAAAGACCTTCTCCAAGGCATATAATATTAAAATTGTCAAAAGT
CAATAACAAATAAAAATATTAGGGGCAGCAAGACAGATGAAAATATCCTAAAAAGGAATC
CCCATCAGGCCTTCAACAGGTTTCACATCAGAAACCTTACAGGGTAAGAATGGAATGATA
TATTCAAAATACTGAAAGATAAAAAATATCAGCCAAGCATACTCTATCCTGTGAAGTTAT
TCTTCAGATATGACAGAGAAATAAAAGCTTTCCCAGATAAACAAAAGCTGAAAGAGTTCA
TCACCACTAGACCTGCCTTACAAGAAATGATGAAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LEDRNTEMLKMEEERELRLKRSEDIFQEIYNPIRKRNIRIISIPTGEERQNRR-ESLFKEIITENFLNLGKGLEIQVKEANRTPNYINVERPSPRHIL-V
L.DRN..ML..E.ER.LR....E.I.QEI...IRK.NI..I.IP.G.....RR.ESLFKEI...NF.NLGK.L.IQV.EAN.TPNY.N..RPSPRHI...
Retrocopy
LKDRN--MLHVEKERKLRFXXXEEILQEISDSIRKSNISVIDIPEGQDEE-RR\ESLFKEIMA*NFPNLGKKLDIQVREANSTPNYFNTKRPSPRHII/I


Parental protein
KLAKLVMKEYIMAEAARQKKITYKGSPIRLSADFSQTVQTRR-EWNDIIKILKYKNYPPRILYPVKLSFRYGREIKAFQDKQKLREFITTRPPLQEMMK
K..K......I...AARQ.KI..KG.PIR.S..F.........EWNDI.KILK.K.Y.P.ILYPVKL.FRY.REIKAF.DKQKL.EFITTRP.LQEMMK
Retrocopy
KIVKSQ*QIKILG-AARQMKIS*KGIPIRPSTGFTSETLQGK/EWNDIFKILKDKKYQPSILYPVKLFFRYDREIKAFPDKQKLKEFITTRPALQEMMK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide