RetrogeneDB ID:
retro_ecab_245
Organism:
Horse ( Equus_caballus )
Location:
10:65356208-65356622 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
71.62 %
Coverage:
77.54 %
Frameshifts:
3
Stop codons:
0


Parental gene:
Parental gene symbol:
RPE
Parental gene aliases:
No gene alias available
Parental gene description:
ribulose-5-phosphate-3-epimerase [Source:HGNC Symbol;Acc:10293]

Genomic region (view in browser)





>retro_ecab_245
CATTTTGTCTCCAGCGTCACCTTTGGCCACCCTGTGGTAGAAAGTGTCCAGCTAGGCTTT
GACATGCACGTGATAGCATCCAGGCTGGAACAGTGGGTAAAACCAAAGGCTGTAGCAGGA
ACCCATCAATATAGTTTAATCTCGAGGTTACTGAGAAACCAGGGGCTTTGACCAAAGACA
TAGTGAGAACGAGATGAAATTGACCTTGCCATCAAACCAGGAACTACAGGTGAGCATTTG
GCACCATGGGCTAATCAGATAAAGATAGCCTTGGTTATGACAGTGGGACCTGGGTTTGGA
AGGCAGAAATTCATGAACGATGTGATGCCAAAGGTTCACTGGTTGAGGATCCAGTTCCCA
TCTTTGGACTTAGAGGTTGACTGTGAAGTGGGTCCTGACACCGCCCATAAATGT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.04
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.06

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
HFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSRPEQWVKPMAVAGANQYT-FHLEATENPGALIKDI-RENGMK-VGLAIKPGTTVEYLAPWANQIDMA
HFV...TFGHPVVES...QLG....FDMH...SR.EQWVKP.AVAG..QY..F.LE.TE.PGAL.KDI..EN.MK...LAIKPGTT.E.LAPWANQI..A
Retrocopy
HFVSSVTFGHPVVESV--QLG----FDMHVIASRLEQWVKPKAVAGTHQYS/FNLEVTEKPGALTKDI/SENEMK/IDLAIKPGTTGEHLAPWANQIKIA


Parental protein
LVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTIHKC
LVMTV.PGFG.QKFM.D.MPKVHWLR.QFPSLD.EVD..VGPDT.HKC
Retrocopy
LVMTVGPGFGRQKFMNDVMPKVHWLRIQFPSLDLEVDCEVGPDTAHKC


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide