RetrogeneDB ID:
retro_ecab_246
Organism:
Horse ( Equus_caballus )
Location:
10:67283170-67283684 (-)
Status:
KNOWN_PSEUDOGENE
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
Alignment summary
Identity:
90.17 %
Coverage:
73.39 %
Frameshifts:
1
Stop codons:
0
Parental gene:
Parental gene symbol:
ANP32B
Parental gene aliases:
No gene alias available
Parental gene description:
acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:HGNC Symbol;Acc:16677]
Genomic region (view in browser)
>retro_ecab_246
GTTCGAGAACTTGTCCTGGACAATTGCAAATCAAACGATGGGAAAATTGAGGGCTTAACA
GCTGAATTTGTGAAAGAGTTCCTCAGTCTAATAAATGTAGGCTTGATTTTCAGTTTCAAA
TCTCCCCAAACTACCTAAATTGAAAAAGCTTGAGCTCAGTGACAATAGAATCTTTGGAGG
TCTGGACGTGTTAGCAGAAAAACTTCCAAATCTCACACATCTAAACTTAAGTGGAAATAA
ACTGAGAGGCATCGGCACCTTGGAACCTCTGAAAAAGTTGGACTGTCTGAAAAGCCTGGA
TCTGTTTAACGGTGAGGTTACGAACCTGAATGACTACCGAGAGAGTGTCTTCAAGCTCCT
GCCCCAGCTGACCTACCTGGATGGCTATGACCGAGAGGATCTGGAAGCCCCCGACTCGGA
TGCCGAGGTGGACGGTGTGGACGAAGAAGAGGAGGACGAAGAGGATGAGGATGGTGAGGA
GGAAGAGTTTGGACATGATGGAGAAGTTGATGAA
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 1.68 |
| SRP021940_cerebellum | 0.85 |
| SRP021940_embryo | 2.28 |
| SRP021940_placental_villous | 1.21 |
| SRP021940_synovial_membrane | 1.9 |
| SRP021940_testis | 0.53 |
Parental protein coverage
Changes in the retrocopy sequence
