RetrogeneDB ID:
retro_ecab_249
Organism:
Horse ( Equus_caballus )
Location:
11:3802215-3802824 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
87.92 %
Coverage:
100.0 %
Frameshifts:
3
Stop codons:
0


Parental gene:
Parental gene symbol:
PPCDC
Parental gene aliases:
No gene alias available
Parental gene description:
phosphopantothenoylcysteine decarboxylase [Source:HGNC Symbol;Acc:28107]

Genomic region (view in browser)





>retro_ecab_249
ATGGAAGCAAGGGCCTCGTGTCCAGCTGCTGCCCCCTCGGTGGAGGGACAGTTCCGTGTT
CTCGTGGGTGTCACTGGGAGTGTTGCAGCTCTGAAGTTGCCCCTTCTGGTGCGAAGGCTT
TTGGATATTCCTGGCCTGGAAGTAGCAGTAGTTAAAACTGAGAGAGCCAAACATTTCTAC
ACTCCCAGGATGTTCCTGTCACCCTCGACAGCAATGCTGATGGATGGGAGATGTGGCAGC
GCCGATCTGATCCACTTCTCCACATTGACCTGCGGCAGTGCGCAGACCTGATGCTGGTGG
CTCCTCTTGATGCCAATACTCTGGGGAAGGTGGCTAGAGGCATCTGTGACAACTTGCTTA
CCTGTGTCATCCGGGCCTGGGACTGCAGCAAGCCTCTGCTCTTCTGCCCGGCGATGAACA
CTGCCTGTGGGAGCACCCCATCACCGCGCAGCAGGGGGGCCAGCTCAAGGCCTTCGCTAC
GTCGAGATTCCCTGTGTGGCCAAGAAGCTGGTGTGTGGAGACCAACATCTGGGGGCCATG
GCTGCAGTGGGCACCATTGTGGACAGAGTGAAAGAGATCCTCCCCCTTCACAGTGGCTTC
CAGCAGAGT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.04
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MEARASCPAAAPLVERQFHVLVGVTGSVAALKLPLLVSRLLDIPGLEVAVVTTERAKHFYTP-QDVPVTLYSDADEWEMWKRRSDPVLHIDLRKWADLML
MEARASCPAAAP.VE.QF.VLVGVTGSVAALKLPLLV.RLLDIPGLEVAVV.TERAKHFYTP.QDVPVTL.S.AD.WEMW.RRSDP.LHIDLR..ADLML
Retrocopy
MEARASCPAAAPSVEGQFRVLVGVTGSVAALKLPLLVRRLLDIPGLEVAVVKTERAKHFYTP/QDVPVTLDSNADGWEMWQRRSDPLLHIDLRQCADLML


Parental protein
VAPLDANTLGKVASGICDNLLTCVIRAWDRSKPLLFCPAMNTA-MWEHPITAQQVGQLKAFG-YVEIPCVAKKLVCGDQGLGAMAEVGTIVDKVKEILSL
VAPLDANTLGKVA.GICDNLLTCVIRAWD.SKPLLFCPAMNTA..WEHPITAQQ.GQLKAF..YVEIPCVAKKLVCGDQ.LGAMA.VGTIVD.VKEIL.L
Retrocopy
VAPLDANTLGKVARGICDNLLTCVIRAWDCSKPLLFCPAMNTA/LWEHPITAQQGGQLKAFA/YVEIPCVAKKLVCGDQHLGAMAAVGTIVDRVKEILPL


Parental protein
HGGFQQS
H.GFQQS
Retrocopy
HSGFQQS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide