RetrogeneDB ID:
retro_ecab_251
Organism:
Horse ( Equus_caballus )
Location:
11:19055387-19055990 (+)
Status:
KNOWN_PSEUDOGENE
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary
Identity:
77.94 %
Coverage:
100.0 %
Frameshifts:
2
Stop codons:
2
Parental gene:
Parental gene symbol:
JOSD1
Parental gene aliases:
No gene alias available
Parental gene description:
Josephin domain containing 1 [Source:HGNC Symbol;Acc:28953]
Genomic region (view in browser)
>retro_ecab_251
ATGAGTTGCAGGCCATGAAAAGGAGACAAGGCCAAACCTGAACTGTTGGAGCTGCCCCAG
GCAGCCCCCCCAAATCTACCATGAGAAACAGCACAGGGAAACTTTGTGCCCCACGTGCCC
TCAGTAACATCTTCCAGGACAATGCCTTCACCTGGGAAACGCTCCAAGAGATTTGCCAGA
GGTTGTCACCAAACACCGCAGTGAGCCCCCCACAACAAGAGCATGCTGGGAGATGGGAAC
TATGATGTGAACATCATCATGGCAGCACTTCAGACCAAAGGCTATGAAGCTGTGTGGTGG
GACAAACGCAGGGATGTCAGTGCCATTGCTCTGGCTAATGTCGTGGGCTTCGTCATGAAT
CTGCCCTCCAGCCCGTGCTGGGCTCCCCGGAAGTTGCCTCTCCAAAGGCAGCACTGGATC
TGTGCTCAAGAGGTGGGAGGTGCCTACTACAACCTCAACTCCAAACGGAAGGTGCCCAAG
TGGACCGGAGGCGAGAGCGAGCCCAGGAAATTTCTAGAACACCATTTGCAAGGAAAGAAC
TATGAATTGCTGCTGGTGGTAACAGAAGAGGTGGAAGCCCATCAGAGTTGGAGGACTGAT
GTG
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.0 |
| SRP021940_cerebellum | 0.0 |
| SRP021940_embryo | 0.1 |
| SRP021940_placental_villous | 0.0 |
| SRP021940_synovial_membrane | 0.13 |
| SRP021940_testis | 0.0 |
Parental protein coverage
Changes in the retrocopy sequence
