RetrogeneDB ID:
retro_ecab_253
Organism:
Horse ( Equus_caballus )
Location:
11:26021685-26021925 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
75.61 %
Coverage:
95.24 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
NDUFA3
Parental gene aliases:
No gene alias available
Parental gene description:
NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3, 9kDa [Source:HGNC Symbol;Acc:7686]

Genomic region (view in browser)





>retro_ecab_253
CTCACCACCTTCCTCAAGAAGGCCTGGGCCAAGGAGCCACTGCTGGTTATGTCCTTTTAC
CATTGGAGGCCTTGCTATAATTCTGTCCCCACTCAGCCCCTACACCAAGTAGCCATCGTG
ATCAACCAGGCCACACCTTACAACTACCCAGTGCCCCTCTGAGATGATGGGAACATGTCT
GACATGCCCAGCCACCCCCAGAACCCTCAGGGCCCAAGCTTGGAGTGGCCAAAGAAACTG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LAAFLKNAWAKEPVLVAS-FTIAGLAIILPILSPYTK-YSIMINKATPYTYPVPLRDDGNMPDVPSHPQDPQGPSLEWLKKL
L..FLK.AWAKEP.LV.S.FTI.GLAIIL..LSPYTK...I.IN.ATPY.YPVPL.DDGNM.D.PSHPQ.PQGPSLEW.KKL
Retrocopy
LTTFLKKAWAKEPLLVMS\FTIGGLAIILSPLSPYTK/VAIVINQATPYNYPVPL*DDGNMSDMPSHPQNPQGPSLEWPKKL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide