RetrogeneDB ID:
retro_ecab_254
Organism:
Horse ( Equus_caballus )
Location:
11:27758850-27759146 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
65.0 %
Coverage:
68.75 %
Frameshifts:
1
Stop codons:
3


Parental gene:
Parental gene symbol:
BUD31
Parental gene aliases:
No gene alias available
Parental gene description:
BUD31 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:29629]

Genomic region (view in browser)





>retro_ecab_254
CTTGGCCCCTCCTTCAGAATTCATCATAAGAAAACTTGGTAAATCTTCAACCTTTTCATA
AGCAGAAGGCCATGAGCCAAGAACTGTATGAATGATACATTAAGGAATGCGATGCAGATA
AAAGGCTGATTGCCAAAAGGAAAAGAGAGAGTTATGAGAACCTGTGCTGTCTCTGATGTA
TTCAGACTTGGGATACCAACTTCAGAAATGACTTCATTTGCCAGGTCCTTGAAAGCAAGC
TGGATGTGAGGATGATCATCAAGGATCATCACTGTGGCTGCAGGGGCTGCAGTGGC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LWPIFRIHHQKTRYIFDLF-YKRKAISRELYEYCIKEGYADKNLIAKWKKQGYENLCCLRCIQTRDTNFGTNCICRVPKSKLEVGRIIECTHCGCRGCSG
L.P.FRIHH.KT..IF.LF..K.KA.S.ELYE..IKE..ADK.LIAK.K...YENLCCL.CIQT.DTNF....IC.V..SKL.V..II...HCGCRGCSG
Retrocopy
LGPSFRIHHKKTW*IFNLF/HKQKAMSQELYE*YIKECDADKRLIAKRKRESYENLCCL*CIQTWDTNFRNDFICQVLESKLDVRMIIKDHHCGCRGCSG


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide