RetrogeneDB ID:
retro_ecab_256
Organism:
Horse ( Equus_caballus )
Location:
11:43112677-43113208 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
68.13 %
Coverage:
67.42 %
Frameshifts:
4
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_256
ATGGTGGTCAGCAAGAACAAGCACCTTATGAATGGTGGCAAGAAGGTTGCCAGGAAAAAG
TGGTTGATCCTTCTGGGGAGATTGGTTTTGATATGAAAGCACTAGCTATGTTCAAGGTAA
GAAATATTGGGAAAACACTAGTCACAAGAACTCAAGAAATCAAAATTGCATCTGATGGCC
TCAGGGTCATGTTTTTGAAGTGAGCTTTGCTGATGTGCAGAATGATGAATTTGCATTTAG
AAAATTCAAGCTGATTACAGAGGGTGTTCAGGGCAAAAACTACCTGACTAACCTCTATGG
CTGGATCTTACCTTTTGACATAATGTGCTCCAGGGTCAAAACACGGGAAACCATGATTGA
AGCTCATGTTGACGTCAAGACTAACGATGATCATTTGCTTCATCTATTCTGTATTAGTGT
TACTGAAAAAACTCAATAACCAGATTCAGAAGACCCTCTTACACTCAGTACAAACAAGTC
CATCAAATCCGGAAGAAGATGGTGGAAATCATGACCCCAGAGATGTGAACG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.17
SRP021940_cerebellum 0.05
SRP021940_embryo 0.07
SRP021940_placental_villous 0.09
SRP021940_synovial_membrane 0.05
SRP021940_testis 0.06

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAVGKNKRLTKGGKKGAKKK-VVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLK-GRVFEVSLADLQNDEVAFRKFKLITEDVQGKNCLT
M.V.KNK.L..GGKK.A.KK.VVDP.S.....D.KA.AMF..RNIGKTLVTRTQ..KIASDGL..G.VFEVS.AD.QNDE.AFRKFKLITE.VQGKN.LT
Retrocopy
MVVSKNKHLMNGGKKVARKK/VVDP-SGEIGFDMKALAMFKVRNIGKTLVTRTQEIKIASDGLR/GHVFEVSFADVQNDEFAFRKFKLITEGVQGKNYLT


Parental protein
NFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFT-KKRNNQIRKT-SYAQHQQVRQIRKKMMEIMTREVQT
N..G..L..D.MCS.VK...TMIEAHVDVKT.D..LL.LFC...T.KK.NNQI.KT.SY.Q..QV.QIRKKM.EIMT.E..T
Retrocopy
NLYGWILPFDIMCSRVKTRETMIEAHVDVKTNDDHLLHLFCISVT\KKLNNQIQKT\SYTQYKQVHQIRKKMVEIMTPEM*T


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide